simonsfoundation / jp_gene_vizLinks
A collection of visualizations for genomics related information for use with Jupyter notebooks.
☆10Updated 3 years ago
Alternatives and similar repositories for jp_gene_viz
Users that are interested in jp_gene_viz are comparing it to the libraries listed below
Sorting:
- Tool to easily start up an IPython cluster on different schedulers.☆147Updated 5 years ago
- Deploy Dask on DRMAA clusters☆40Updated 4 years ago
- IPython notebooks with YAML file format☆31Updated 7 years ago
- %conda magic for IPython☆28Updated 8 years ago
- deploy Dask.distributed to GridEngine (sge/pbs) cluster systems☆21Updated 8 years ago
- Execute scripts in their own temporary environment☆72Updated 5 years ago
- Efficient storage of same-type, uneven-size arrays☆12Updated 6 years ago
- lazy parallel ondemand zero copy numpy array data flows with caching and dirty propagation☆78Updated 5 years ago
- Manage traditional HPC cluster workflows in Python☆13Updated 7 years ago
- Allows Jupyter Notebook extension writers to make their extension pip installable!☆38Updated 7 years ago
- Package template for a project using Cython☆58Updated 9 years ago
- [EXPERIMENTAL] pandoc-compatible, Jupyter-aware document conversion library in Python☆51Updated 7 years ago
- A demo and tutorial for how to use git and singularity to make your research more portable and reproducible☆26Updated 8 years ago
- A pure Python HDF5 file reader☆72Updated 3 months ago
- IPython magic for SLURM.☆69Updated 5 years ago
- a nose plugin for finding and running IPython notebooks as nose tests☆80Updated 3 years ago
- Demo project for building and shipping Python conda packages with Appveyor CI and Travis CI☆67Updated 6 years ago
- The remote Jupyter kernel/kernels administration utility☆53Updated 8 years ago
- ☆37Updated 8 years ago
- High-level python wapper for the Sun Grid Engine (SGE) using DRMAA and ZMQ☆21Updated 11 years ago
- A light weight conda interface library☆15Updated 9 years ago
- Command-line tool in Python to explore a HDF5 file☆19Updated 9 years ago
- Connect to a LSF main node directly or trough a ssh jump node, launch a jupyter notebook via bsub and open automatically a tunnel. The n…☆20Updated 3 years ago
- like a conda-metapackage but for channels!☆69Updated 4 years ago
- Easily map Python functions onto a cluster using a DRMAA-compatible grid engine like Sun Grid Engine (SGE).☆84Updated 2 years ago
- A small package of software which will help you configure an automated build and publish process, using Travis CI and GitHub Pages.☆106Updated 9 years ago
- Pandas-aware non-linear least squares regression using Lmfit☆10Updated 8 years ago
- Code for my talk at PyCon 2017☆9Updated 8 years ago
- Lecture notes (in IPython Notebook format) on Reproducible Science And Modern Scientific Software☆38Updated 9 years ago
- [RETIRED] Recipes for setting up components related to the incubating dashboards effort☆28Updated 7 years ago