Alternatives and similar repositories for qiime-deploy

Users that are interested in qiime-deploy are comparing it to the libraries listed below

• SchlossLab / schtools
  Schloss Lab Tools for Reproducible Microbiome Research 💩
  ☆31Updated last year
• nh13 / snakeparse
  Making Snakemake workflows into full-fledged command line tools since 1999.
  ☆52Updated 7 years ago
• compmetagen / micca
  micca - MICrobial Community Analysis
  ☆20Updated 5 years ago
• pnnl / hundo
  Snakemake-based amplicon processing protocol for 16S and ITS sequences.
  ☆14Updated last year
• umd-byob / presentations
  Bring Your Own Bioinformatics
  ☆27Updated 9 years ago
• MVesuviusC / primerTree
  PrimerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs
  ☆52Updated last year
• goeckslab / isoseq-browser
  ☆13Updated 7 years ago
• dkoslicki / MetaPalette
  Metagenomic profiling and phylogenetic distances via common kmers
  ☆42Updated 4 years ago
• grenaud / deML
  Maximum likelihood demultiplexing
  ☆47Updated 5 months ago
• jbisanz / MicrobeR
  Handy tools for Microbiome analysis in R
  ☆18Updated 6 years ago
• Yandell-Lab / taxonomer_0.5
  full taxonomer cython repository
  ☆22Updated 5 years ago
• aryeelab / umi
  Preprocessing tools for unique molecular index (UMI) sequencing reads
  ☆31Updated 2 years ago
• twbattaglia / koeken
  A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.
  ☆26Updated 8 years ago
• zifanzhu / MicroPro
  A microbial profiling framework for metagenomic analysis
  ☆24Updated 5 years ago
• riverlee / MitoSeek
  Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing
  ☆40Updated 6 years ago
• blab / zika-seq
  Pipelines to do MinION sequencing of Zika virus
  ☆15Updated 5 years ago
• pyrevo / ClusterScan
  ClusterScan, search for clusters of features in a given annotation.
  ☆11Updated 3 years ago
• ukhsa-collaboration / PHEnix
  Public Health England SNP calling pipeline.
  ☆36Updated 6 years ago
• ngsutils / ngsutils
  Tools for next-generation sequencing analysis
  ☆88Updated 6 years ago
• alexiswl / poreduck
  A comprehensive toolkit for running Oxford Nanopore's MinION
  ☆12Updated 6 years ago
• WilsonSayresLab / BioinformaticsIntroduction
  ☆28Updated 5 years ago
• edamame-course / 2015-tutorials
  tutorials for 2015 EDAMAME
  ☆24Updated 7 years ago
• qunfengdong / BLCA
  ☆35Updated last year
• joey711 / biom
  Development version of the biom package for R
  ☆24Updated 4 years ago
• sanger-pathogens / gff3toembl
  Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI
  ☆29Updated 6 years ago
• zibraproject / zika-pipeline
  The Zika bioinformatics pipeline
  ☆35Updated 5 years ago
• kbseah / genome-bin-tools
  Interactive tools for metagenome visualization and binning in R
  ☆28Updated 7 years ago
• Cibiv / Teaser
  A tool to benchmark mappers and different parameters within minutes
  ☆44Updated 6 years ago
• gaitat / GenomeUPlot
  The Genome U-Plot is a JavaScript tool to visualize chromosomal abnormalities in the Human Genome using a U-shape layout.
  ☆32Updated 2 years ago
• Clinical-Genomics / chanjo
  Chanjo provides a better way to analyze coverage data in clinical sequencing.
  ☆51Updated 7 months ago