Tool to easily install QIIME's dependencies on Linux systems
☆35Oct 14, 2015Updated 11 years ago
Alternatives and similar repositories for qiime-deploy
Users that are interested in qiime-deploy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.☆285Dec 19, 2022Updated 3 years ago
- The Biological Observation Matrix (BIOM) Format Project☆97Oct 12, 2026Updated 3 weeks ago
- RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s☆60Dec 21, 2022Updated 3 years ago
- CROP: Clustering 16s rRNA for OTU Prediction☆13May 2, 2017Updated 9 years ago
- Welcome to the mothur project, initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology & Imm…☆279Aug 21, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Qiita - A multi-omics databasing effort☆135Oct 20, 2026Updated last week
- Metagenomic binning suite☆29Sep 30, 2022Updated 4 years ago
- Accurate quality filtering of metagenomic amplicon sequences☆12Aug 26, 2019Updated 7 years ago
- The MG-RAST Backend -- the API server☆45Apr 27, 2023Updated 3 years ago
- Statistical Analysis of Metagenomic Profiles☆93Sep 21, 2026Updated last month
- tutorials for 2015 EDAMAME☆23Aug 9, 2017Updated 9 years ago
- Extremely accurate algorithm used to group DNA sequences from microbial communities into operational taxonomic units (proxy for species) …☆14Nov 20, 2018Updated 7 years ago
- Scripts and resources for analyzing sequence data for select eco-functional genes☆20May 25, 2017Updated 9 years ago
- Code repository of the Earth Microbiome Project.☆171Dec 13, 2022Updated 3 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Phylogenetic and taxonomic analysis for genomes and metagenomes☆82Feb 17, 2016Updated 10 years ago
- Metagenomics Workshop 2014-5-21 to 2014-5-23 at SciLifeLab, Stockholm☆18May 23, 2014Updated 12 years ago
- Deblur is a greedy deconvolution algorithm based on known read error profiles.☆102Mar 8, 2025Updated last year
- Utility program for extracting sequences from a fasta/fastq file☆35Dec 23, 2024Updated last year
- Perl scripts for working with the GFF format☆16Aug 24, 2011Updated 15 years ago
- ☆12Oct 3, 2023Updated 3 years ago
- The MG-RAST pipeline☆25Nov 30, 2022Updated 3 years ago
- Reduced Alphabet based Protein similarity Search☆40Nov 30, 2020Updated 5 years ago
- Collection of commonly used RDP Tools for easy building☆53Jun 8, 2023Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Calculates the lowest common ancestors of each query sequence in a Blast result☆32Oct 25, 2017Updated 9 years ago
- Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tes…☆92Oct 23, 2026Updated last week
- An extension of Velvet assembler to de novo metagenome assembly from short sequence reads☆15May 29, 2012Updated 14 years ago
- Confirming specific taxonomic groups within your samples.☆19Dec 21, 2020Updated 5 years ago
- PhylOTU identifies microbial OTUs from metagenomic data☆24May 16, 2013Updated 13 years ago
- A tutorial on methods of 16S analysis with QIIME 1☆72Jul 26, 2019Updated 7 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆50Apr 14, 2020Updated 6 years ago
- Parallel Recipes : parallel workflow execution made easy☆13Sep 1, 2015Updated 11 years ago
- Repository of script tools, examples, and contributed code for using the MG-RAST API☆25Mar 22, 2021Updated 5 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Scripts for analyzing Illumina-generated environmental DNA sequence data.☆21Feb 22, 2018Updated 8 years ago
- Scripts and tutorials on how to assemble individual microbial genomes from metagenomes☆80Jun 14, 2016Updated 10 years ago
- ISB CGC Webapp☆12Dec 3, 2025Updated 10 months ago
- Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies☆21Jul 12, 2026Updated 3 months ago
- A set of command line tools based on R and JavaScript.☆17Apr 21, 2020Updated 6 years ago
- PAired-eND Assembler for DNA sequences☆138Dec 21, 2020Updated 5 years ago
- Ergatis is a web-based utility that is used to create, run, and monitor reusable computational analysis pipelines.☆16Jan 4, 2023Updated 3 years ago