qiime / qiime-deploy
Tool to easily install QIIME's dependencies on Linux systems
β33Updated 9 years ago
Alternatives and similar repositories for qiime-deploy:
Users that are interested in qiime-deploy are comparing it to the libraries listed below
- tutorials for 2015 EDAMAMEβ24Updated 7 years ago
- β13Updated 7 years ago
- Schloss Lab Tools for Reproducible Microbiome Research π©β30Updated last year
- β23Updated 6 years ago
- A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.β25Updated 8 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBIβ29Updated 6 years ago
- Development version of the biom package for Rβ24Updated 3 years ago
- Metagenomic profiling and phylogenetic distances via common kmersβ42Updated 3 years ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)β38Updated last year
- Assembly by Reduced Complexity (ARC)β41Updated 9 years ago
- Utility program for extracting sequences from a fasta/fastq fileβ36Updated 3 months ago
- A microbial profiling framework for metagenomic analysisβ24Updated 4 years ago
- Advanced metagenomic Sequence Analysis in Rβ15Updated 6 years ago
- FAST: Fast Analysis of Sequences Toolboxβ31Updated 5 years ago
- A repository with scripts to run pipeline that are commonly used in the Meren Labβ11Updated 7 years ago
- Handy tools for Microbiome analysis in Rβ18Updated 5 years ago
- blast, shmlastβ22Updated 4 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classesβ31Updated 9 months ago
- Snakemake-based amplicon processing protocol for 16S and ITS sequences.β14Updated last year
- Developments in next generation sequencing: instruments, read lengths, throughput. Seeβ27Updated 6 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomesβ27Updated 7 years ago
- Toolkit for preparing genomes for submission to NCBIβ29Updated 3 years ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied annβ¦β25Updated 2 years ago
- NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.β30Updated 4 months ago
- "The who the what the huh?" is our pipeline for converting bcl files to fastq and performing QC.β11Updated 2 years ago
- β20Updated 10 years ago
- Public Health England SNP calling pipeline.β36Updated 6 years ago
- Interactive tools for metagenome visualization and binning in R