biocore / American-GutLinks
American Gut open-access data and IPython notebooks
☆123Updated 8 years ago
Alternatives and similar repositories for American-Gut
Users that are interested in American-Gut are comparing it to the libraries listed below
Sorting:
- Qiita - A multi-omics databasing effort☆127Updated this week
- Materials for Analyzing Next-Generation Sequencing (ANGUS) course.☆107Updated 2 years ago
- Curated Metagenomic Data of the Human Microbiome☆138Updated last month
- Code repository of the Earth Microbiome Project.☆162Updated 2 years ago
- Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tes…☆91Updated 3 years ago
- Cross-disease comparison of case-control gut microbiome studies☆68Updated 6 years ago
- List of computational resources for analyzing microbial sequencing data.☆68Updated last month
- Code used in MiCE 8992 Spring 2016☆43Updated 9 years ago
- A public resource for microbiome bioinformatics benchmarking using artificially constructed (i.e., mock) communities.☆81Updated 6 years ago
- Genome data visualizations☆218Updated last week
- Genomic Data Retrieval with R☆222Updated last week
- compositional data analysis toolbox☆59Updated 2 years ago
- functions to analyse sanger sequencing reads in R☆101Updated 4 months ago
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆115Updated 2 years ago
- Issue tracker for the Biostar Handbook☆62Updated 3 years ago
- An R package for microbial community analysis in an environmental context☆67Updated 4 years ago
- Statistical Analysis of Metagenomic Profiles☆93Updated 5 years ago
- Sparse InversE Covariance estimation for Ecological Association and Statistical Inference☆212Updated last month
- Statistics course for JHU Genomic Data Science Sequence☆158Updated 9 years ago
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆160Updated 2 years ago
- Statistical analysis for sparse high-throughput sequencing☆69Updated 7 months ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆119Updated last year
- ☆43Updated 7 years ago
- Visualize microbiome data with black magic ggtree☆68Updated 4 years ago
- Materials for Genomics Data Science: Introduction to Bioconductor☆96Updated last year
- SHallow shOtGUN profiler☆54Updated 3 years ago
- RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s☆58Updated 2 years ago
- Workshop materials for shotgun metagenomics☆36Updated 8 years ago
- ☆71Updated 4 years ago
- Scripts and data for Plotting in R for Biologists, a video course on YouTube☆60Updated 4 years ago