American Gut open-access data and IPython notebooks
☆130Mar 17, 2017Updated 9 years ago
Alternatives and similar repositories for American-Gut
Users that are interested in American-Gut are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆16Jun 21, 2018Updated 7 years ago
- ☆23Nov 6, 2020Updated 5 years ago
- an R package to biotype a community☆14Oct 19, 2021Updated 4 years ago
- Qiita - A multi-omics databasing effort☆131Apr 23, 2026Updated 2 weeks ago
- Database of genomes integrated from the gut microbiome and other environments☆45Feb 3, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.☆285Dec 19, 2022Updated 3 years ago
- ☆42Oct 10, 2025Updated 6 months ago
- Vanilla regression methods for microbiome differential abundance analysis☆61Nov 3, 2020Updated 5 years ago
- Insights into the inner workings of transformer models for protein function prediction☆14Feb 9, 2024Updated 2 years ago
- Intelligent and cost-effective bidding on cloud computing instances for bioinformatics pipelines.☆13Dec 8, 2017Updated 8 years ago
- ☆43Nov 20, 2017Updated 8 years ago
- ☆18Nov 19, 2022Updated 3 years ago
- A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.☆26Feb 2, 2017Updated 9 years ago
- For tool creators to share their inventions that analyze, visualize, and make meaning of microbiome data.☆66Aug 15, 2016Updated 9 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A QIIME 2 implementation of SMURF☆13Apr 27, 2022Updated 4 years ago
- Processing support for Greengenes2☆14Jul 31, 2023Updated 2 years ago
- Neural networks for microbe-metabolite interaction analysis☆131Nov 4, 2022Updated 3 years ago
- Python-based client for downloading data made available through portals powered by the GDC-based portal system..☆21Mar 4, 2026Updated 2 months ago
- Development version of the biom package for R☆24Apr 13, 2021Updated 5 years ago
- compositional data analysis toolbox☆60Dec 15, 2022Updated 3 years ago
- The Biological Observation Matrix (BIOM) Format Project☆97Dec 23, 2025Updated 4 months ago
- Sparse Cooccurence Network Investigation for Compositional data☆25Feb 1, 2026Updated 3 months ago
- Accurate read-based metagenome characterization using a hierarchical suite of unique signatures. Please visit our homepage:☆23Jan 29, 2019Updated 7 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- programmable access to GM repo☆30May 16, 2023Updated 2 years ago
- useful tools for manipulating uBiome information☆45Dec 7, 2017Updated 8 years ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆44Mar 26, 2024Updated 2 years ago
- gutSMASH☆59Oct 3, 2025Updated 7 months ago
- Ordination lectures for Ecological Methods in Oulu☆22Aug 1, 2024Updated last year
- Snakemake workflow to detect and classify viruses in metagenome assemblies.☆19Feb 14, 2024Updated 2 years ago
- Model-based Integration of Metabolite Observations and Species Abundances☆26Feb 21, 2020Updated 6 years ago
- A public resource for microbiome bioinformatics benchmarking using artificially constructed (i.e., mock) communities.☆84May 14, 2019Updated 6 years ago
- Dynamic FBA for use with COBRApy metabolic models☆10Sep 26, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆32Jan 4, 2025Updated last year
- A context aware tool for proteasomal cleavage predictions☆16May 30, 2025Updated 11 months ago
- scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resourc…☆1,202May 3, 2026Updated last week
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆170Sep 4, 2025Updated 8 months ago
- ☆20Jun 8, 2020Updated 5 years ago
- PyCogent: Official repository for software and unit tests☆92Mar 24, 2021Updated 5 years ago
- Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations☆15Nov 24, 2025Updated 5 months ago