Alternatives and similar repositories for American-Gut

Users that are interested in American-Gut are comparing it to the libraries listed below

• picrust / picrust
  Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tes…
  ☆89Updated 2 years ago
• qiita-spots / qiita
  Qiita - A multi-omics databasing effort
  ☆125Updated last week
• griffithlab / GenVisR
  Genome data visualizations
  ☆217Updated last year
• caporaso-lab / mockrobiota
  A public resource for microbiome bioinformatics benchmarking using artificially constructed (i.e., mock) communities.
  ☆81Updated 6 years ago
• dib-lab / dammit
  just annotate it, dammit!
  ☆92Updated last year
• donovan-h-parks / STAMP
  Statistical Analysis of Metagenomic Profiles
  ☆93Updated 5 years ago
• microsud / Tools-Microbiome-Analysis
  A list of R environment based tools for microbiome data exploration, statistical analysis and visualization
  ☆115Updated 2 years ago
• MariaNattestad / R_for_biologists
  Scripts and data for Plotting in R for Biologists, a video course on YouTube
  ☆60Updated 4 years ago
• benjjneb / decontam
  Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data
  ☆157Updated 2 years ago
• fhcrc / seqmagick
  An imagemagick-like frontend to Biopython SeqIO
  ☆115Updated last year
• ngs-docs / angus
  Materials for Analyzing Next-Generation Sequencing (ANGUS) course.
  ☆107Updated 2 years ago
• waldronlab / curatedMetagenomicData
  Curated Metagenomic Data of the Human Microbiome
  ☆133Updated 2 weeks ago
• roblanf / sangeranalyseR
  functions to analyse sanger sequencing reads in R
  ☆101Updated 3 months ago
• shenwei356 / bio_scripts
  Practical, reusable scripts for bioinformatics
  ☆101Updated 6 years ago
• mikelove / bioc-refcard
  Bioconductor cheat sheet
  ☆189Updated 9 months ago
• biocore / qiime
  Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.
  ☆286Updated 2 years ago
• CGATOxford / cgat
  Do not use - please refer to our newest code: https://github.com/cgat-developers/cgat-apps
  ☆124Updated 6 years ago
• MVesuviusC / primerTree
  PrimerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs
  ☆52Updated last year
• lch14forever / microbiomeViz
  Visualize microbiome data with black magic ggtree
  ☆68Updated 4 years ago
• sanger-pathogens / pathogen-informatics-training
  ☆70Updated 4 years ago
• microbiome / microbiome
  microbiome R package
  ☆299Updated 6 months ago
• husonlab / megan-ce
  MEGAN Community Edition
  ☆70Updated 10 months ago
• arq5x / poretools
  a toolkit for working with Oxford nanopore data
  ☆243Updated 2 years ago
• maasha / biopieces
  Biopieces is a bioinformatic framework of tools easily used and easily created.
  ☆142Updated 6 years ago
• grunwaldlab / metacoder
  Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data
  ☆139Updated 3 months ago
• kylebittinger / qiimer
  Quantitative Insights Into Microbial Ecology - parsing and plotting functions for R
  ☆18Updated 8 years ago
• biologyguy / BuddySuite
  Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files
  ☆127Updated 3 years ago
• datacarpentry / shell-genomics
  Introduction to the Command Line for Genomics
  ☆65Updated this week
• stevetsa / awesome-microbes
  List of computational resources for analyzing microbial sequencing data.
  ☆68Updated last year
• cduvallet / microbiomeHD
  Cross-disease comparison of case-control gut microbiome studies
  ☆67Updated 6 years ago