MG-RAST / matRLinks
Metagenomics Analysis Tools
☆24Updated 7 years ago
Alternatives and similar repositories for matR
Users that are interested in matR are comparing it to the libraries listed below
Sorting:
- ☆23Updated 6 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- Statistical analysis for sparse high-throughput sequencing☆69Updated 5 months ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 4 years ago
- Analysing Metagenomic Species (MGS)☆41Updated 4 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆46Updated 5 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- Metagenomics Workshop☆28Updated 8 years ago
- OPAL: Open-community Profiling Assessment tooL☆28Updated 4 months ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆32Updated last year
- ☆32Updated last year
- Calculates the lowest common ancestors of each query sequence in a Blast result☆31Updated 7 years ago
- The MG-RAST Backend -- the API server☆44Updated 2 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 4 months ago
- ☆19Updated 2 years ago
- Protein Alignment and Detection Interface☆61Updated last year
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated 2 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- ☆41Updated 4 years ago
- Automated pipeline for analyses of fungal ITS from the Illumina☆31Updated last month
- ☆22Updated 5 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- Assign taxonomy with blast, can be used for qiime☆22Updated 2 months ago
- Workshop materials for shotgun metagenomics☆36Updated 7 years ago
- SHallow shOtGUN profiler☆54Updated 3 years ago
- A general metagenomics data mining system focus on robust microbiome research☆57Updated 8 months ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last year