MG-RAST / matRLinks
Metagenomics Analysis Tools
☆24Updated 7 years ago
Alternatives and similar repositories for matR
Users that are interested in matR are comparing it to the libraries listed below
Sorting:
- Statistical Analysis of Metagenomic Profiles☆94Updated 5 years ago
- Statistical analysis for sparse high-throughput sequencing☆71Updated last year
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆33Updated 5 years ago
- ☆23Updated 7 years ago
- Rapid and scalable correlation estimation for compositional data☆96Updated last year
- Visualize microbiome data with black magic ggtree☆68Updated 5 years ago
- Course material for the metagenomics course☆47Updated 3 years ago
- ☆79Updated 2 years ago
- The MG-RAST Backend -- the API server☆46Updated 2 years ago
- Workshop materials for shotgun metagenomics☆36Updated 8 years ago
- web documentation for Trinotate☆48Updated 2 years ago
- Functional Mapping and Analysis Pipeline for metagenomics and metatranscriptomics studies☆26Updated 2 years ago
- In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given…☆84Updated 7 years ago
- SourceTracker2☆82Updated last year
- Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tes…☆91Updated 4 months ago
- A tutorial on methods of 16S analysis with QIIME 1☆71Updated 6 years ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆61Updated last year
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆57Updated 3 years ago
- SHallow shOtGUN profiler☆53Updated 3 years ago
- Statistics and visualization for amplicon data☆72Updated 2 years ago
- Automatically exported from code.google.com/p/jmodeltest2☆81Updated 4 years ago
- A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).☆93Updated last month
- RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s☆59Updated 3 years ago
- REference Sequence annotation and CuRatIon Pipeline☆98Updated last month
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆77Updated 5 months ago
- Scripts and tutorials on how to assemble individual microbial genomes from metagenomes☆80Updated 9 years ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆122Updated last year
- Micro 612 genomics workshop☆38Updated 4 years ago
- ☆61Updated 6 years ago
- MEGAN Community Edition☆72Updated last year