Metagenomics Analysis Tools
☆24May 7, 2018Updated 8 years ago
Alternatives and similar repositories for matR
Users that are interested in matR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The MG-RAST Backend -- the API server☆46Apr 27, 2023Updated 3 years ago
- Repository of script tools, examples, and contributed code for using the MG-RAST API☆25Mar 22, 2021Updated 5 years ago
- Functional Mapping and Analysis Pipeline for metagenomics and metatranscriptomics studies☆26Feb 28, 2023Updated 3 years ago
- Statistical Analysis of Metagenomic Profiles☆94Jan 26, 2026Updated 5 months ago
- Repository of our application for human-augmented binning☆27Apr 26, 2021Updated 5 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- parallel c prinseq☆21Aug 10, 2022Updated 3 years ago
- Bacterial genomes finishing tool for structural insights on draft genomes☆23Sep 22, 2023Updated 2 years ago
- metag-rev-sup☆23Jun 21, 2017Updated 9 years ago
- Pipeline for Illumina shotgun sequencing of 16S rRNA amplicon sequences☆14Sep 2, 2016Updated 9 years ago
- Hagfish - assess an assembly through creative use of coverage plots☆36Aug 9, 2012Updated 13 years ago
- Metagenomics Workshop 2014-5-21 to 2014-5-23 at SciLifeLab, Stockholm☆18May 23, 2014Updated 12 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Aug 18, 2017Updated 8 years ago
- Bacterial Genomics workflow for short(Illumina) and long-read (Oxford Nanopore) sequencing data☆12Feb 20, 2026Updated 4 months ago
- SHAMAN is a SHiny application for Metagenomic ANalysis including a bioinformatic workflow, the statistical analysis and multiple visualiz…☆13Feb 5, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆17Jun 9, 2025Updated last year
- Assessing the quality of genomes using busco☆15Mar 23, 2023Updated 3 years ago
- Qiita - A multi-omics databasing effort☆132May 8, 2026Updated last month
- Miscellaneous functions for metagenomic analysis.☆54May 14, 2026Updated last month
- Fast genealogical relationship evaluation of bacterial isolates with WGS data.☆12Jan 17, 2022Updated 4 years ago
- Visualize microbiome data with black magic ggtree☆68Sep 3, 2020Updated 5 years ago
- A couple of tools I find indispensable for post orthomcl down-stream analysis.☆11Oct 2, 2019Updated 6 years ago
- Plasmid and antimicrobial resistance pipeline☆16Apr 30, 2026Updated last month
- The MG-RAST pipeline☆25Nov 30, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Airflow POC demo : 1) env set up 2) airflow DAG 3) Spark/ML pipeline | #DE☆11Dec 19, 2022Updated 3 years ago
- A pipeline to use Lep-Map3 to create linkage maps and LepAnchor for anchoring and orienting genome assemblies with said linkage maps.☆15Jun 24, 2025Updated last year
- ☆17Mar 11, 2024Updated 2 years ago
- Raw data and scripts used to benchmark eggnog-mapper. Analysis and additional tests cases are provided as a python notebook.☆21Apr 5, 2017Updated 9 years ago
- Calculates the lowest common ancestors of each query sequence in a Blast result☆32Oct 25, 2017Updated 8 years ago
- A pipeline for taxonomic classification and functional annotation of metagenomic reads. Based on MEDUSA☆14Apr 16, 2025Updated last year
- emapper-utils: utils for parse emapper result☆10Sep 22, 2020Updated 5 years ago
- Share my knowledge, share my life.☆11Apr 5, 2018Updated 8 years ago
- Convert QIIME files into Oligotyping subsets.☆15Dec 10, 2014Updated 11 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆11Aug 6, 2019Updated 6 years ago
- Web content for Meren Lab☆11Updated this week
- ☆11Feb 9, 2024Updated 2 years ago
- Primer3Web is a simple web interface to primer3.☆17Aug 18, 2021Updated 4 years ago
- ATAC-seq Pipeline in conjunction with Duygu Ucar & Jacques Banchereau Laboratories☆12Apr 3, 2019Updated 7 years ago
- 🌈 Interactive analysis of metagenomics data☆453Sep 17, 2025Updated 9 months ago
- Conversion software tool for producing both annotation and tree files for GraPhlAn☆11Feb 2, 2022Updated 4 years ago