MG-RAST / matRLinks
Metagenomics Analysis Tools
☆24Updated 7 years ago
Alternatives and similar repositories for matR
Users that are interested in matR are comparing it to the libraries listed below
Sorting:
- Statistical analysis for sparse high-throughput sequencing☆69Updated 7 months ago
- SHallow shOtGUN profiler☆54Updated 3 years ago
- ☆23Updated 7 years ago
- Rapid and scalable correlation estimation for compositional data☆90Updated last year
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆56Updated 3 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated last month
- Assign taxonomy with blast, can be used for qiime☆23Updated 3 months ago
- Visualize microbiome data with black magic ggtree☆68Updated 4 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 4 years ago
- Statistical Analysis of Metagenomic Profiles☆93Updated 5 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- ☆60Updated 5 years ago
- The MG-RAST Backend -- the API server☆44Updated 2 years ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆55Updated last year
- Metagenomics Workshop☆28Updated 8 years ago
- Workshop materials for shotgun metagenomics☆36Updated 8 years ago
- ☆76Updated last year
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated 2 years ago
- Functional Mapping and Analysis Pipeline for metagenomics and metatranscriptomics studies☆26Updated 2 years ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆37Updated last year
- SourceTracker2☆76Updated last year
- Analysing Metagenomic Species (MGS)☆41Updated 4 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆71Updated 2 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆46Updated 5 years ago
- MetaPathways v2.0: A master-worker model for environmental Pathway/Genome Database construction on grids and clouds☆33Updated 9 years ago
- A short tutorial on how to run local BLAST.☆21Updated 5 years ago
- Calculates the lowest common ancestors of each query sequence in a Blast result☆31Updated 7 years ago
- A general metagenomics data mining system focus on robust microbiome research☆57Updated 10 months ago
- A tutorial on methods of 16S analysis with QIIME 1☆70Updated 5 years ago