MG-RAST / matR

Related projects: ⓘ

• edamame-course / Metagenome
  ☆23Updated 6 years ago
• benjjneb / LRASManuscript
  Reproducible Analyses accompanying DADA2 + PacBio Manuscript
  ☆29Updated 3 years ago
• Finn-Lab / MGS-gut
  Analysing Metagenomic Species (MGS)
  ☆41Updated 3 years ago
• jiwoongbio / FMAP
  Functional Mapping and Analysis Pipeline for metagenomics and metatranscriptomics studies
  ☆26Updated last year
• ngs-docs / 2017-ucsc-metagenomics
  Workshop materials for shotgun metagenomics
  ☆36Updated 7 years ago
• snayfach / MicrobeCensus
  MicrobeCensus estimates the average genome size of microbial communities from metagenomic data
  ☆42Updated 4 years ago
• evolgeniusteam / EvolviewDocumentation
  Documentation for Evolview
  ☆25Updated 2 years ago
• HCBravoLab / metagenomeSeq
  Statistical analysis for sparse high-throughput sequencing
  ☆65Updated 6 months ago
• MG-RAST / MG-RAST
  The MG-RAST Backend -- the API server
  ☆45Updated last year
• smdabdoub / kraken-biom
  Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…
  ☆47Updated 2 years ago
• BikLab / BITMaB2-Tutorials
  Workshop materials for the Second Benthic Invertebrates, Metagenomics, and Bioinformatics Workshop at the TAMUCC Harte Institute in Corpu…
  ☆21Updated 6 years ago
• SegataLab / panphlan
  PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples
  ☆41Updated 11 months ago
• EnvGen / metagenomics-workshop
  Metagenomics Workshop
  ☆27Updated 7 years ago
• Trinotate / Trinotate.github.io
  web documentation for Trinotate
  ☆47Updated last year
• zifanzhu / MicroPro
  A microbial profiling framework for metagenomic analysis
  ☆24Updated 4 years ago
• ToniWestbrook / paladin
  Protein Alignment and Detection Interface
  ☆60Updated 5 months ago
• donia-lab / MetaBGC
  A metagenomic strategy for harnessing the chemical repertoire of the human microbiome
  ☆32Updated last year
• shihuang047 / 2bRAD-M
  ☆16Updated 2 years ago
• nextgenusfs / amptk
  AMPtk: Amplicon ToolKit for NGS data (formally UFITS)
  ☆38Updated 10 months ago
• sanger-pathogens / iva
  de novo virus assembler of Illumina paired reads
  ☆53Updated 3 years ago
• Joseph7e / Assign-Taxonomy-with-BLAST
  Assign taxonomy with blast, can be used for qiime
  ☆21Updated last year
• fanglab / mbin
  mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads
  ☆25Updated last year
• bhattlab / bhattlab_workflows
  Computational workflows for metagenomics tasks, by the Bhatt lab
  ☆46Updated last year
• transcript / samsa2
  SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…
  ☆54Updated 5 months ago
• GenomicsAotearoa / metagenomics_summer_school
  Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber
  ☆51Updated 2 weeks ago
• alipirani88 / Comparative_Genomics
  Micro 612 genomics workshop
  ☆36Updated 3 years ago
• snayfach / MAGpurify
  Improvement of metagenome-assembled genomes
  ☆48Updated 4 years ago
• hildebra / lotus2
  Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.
  ☆52Updated 3 weeks ago
• MVesuviusC / primerTree
  PrimerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs
  ☆50Updated 11 months ago
• knights-lab / SHOGUN
  SHallow shOtGUN profiler
  ☆54Updated 2 years ago