knightlab-analyses / american-gut-analyses

Related projects ⓘ

Alternatives and complementary repositories for american-gut-analyses

• qiime2 / q2-longitudinal
  QIIME 2 plugin for paired sample comparisons
  ☆9Updated 3 weeks ago
• HTGenomeAnalysisUnit / nf-pipeline-regenie
  GWAS and rare variants tests at high speed using regenie
  ☆11Updated 5 months ago
• SchlossLab / Sze_Obesity_mBio_2016
  ☆12Updated 7 years ago
• tseemann / homebrew-bioinformatics-linux
  Homebrew formulae for bioinformatics software only available for Linux
  ☆27Updated 5 years ago
• seandavi / Bioc2017BigDataWorkshopSession
  Tutorial for working with cloud infrastructure and AWS from R
  ☆20Updated 7 years ago
• jsychong / MetaboAnalystR
  ☆10Updated 5 years ago
• statOmics / stageR
  stageR package
  ☆11Updated last year
• tmbuza / iMAP
  iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline
  ☆13Updated 6 months ago
• ctb / 2019-snakemake-ucdavis
  Intro to workflows for efficient automated data analysis, using snakemake.
  ☆32Updated 5 years ago
• nasqar / NASQAR
  NASQAR: A web-based platform for High-throughput sequencing data analysis and visualization
  ☆31Updated 4 years ago
• danknights / mwas
  Perform microbiome-wide association studies with a variety of models
  ☆16Updated 7 years ago
• CharlieCarpenter / tidyMicro
  tidyMicro GitHup Repository
  ☆18Updated 3 years ago
• gschofl / reutils
  Talk to the NCBI EUtils
  ☆20Updated 4 years ago
• omicsCore / SEQprocess
  SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package
  ☆17Updated 4 years ago
• aametwally / MetaLonDA
  METAgenomic LONgitudinal Differential Abundance method
  ☆16Updated 4 years ago
• WeersmaLabIBD / Microbiome
  Microbiome research
  ☆20Updated 2 years ago
• ngless-toolkit / ng-meta-profiler
  Profiler for metagenomics based on NGLess
  ☆13Updated 9 months ago
• raeslab / GMMs
  A manually curated database of human gut metabolic modules.
  ☆17Updated 6 years ago
• immcore / iS-CellR
  iS-CellR: interactive graphical tool for analysis of single-cell RNAseq data
  ☆23Updated 5 years ago
• lexnederbragt / INF-BIO9120_fall2013_de_novo_assembly
  Course material for the de novo assembly part of the INF-BIO9120 course at Univ. of Oslo Fall 2013
  ☆37Updated 11 years ago
• mcalgaro93 / sc2meta
  Methods used in the article "Assessment of statistical methods from single cell, bulk RNA-seq and metagenomics applied to microbiome data…
  ☆10Updated 4 years ago
• snz20 / carnelian
  ☆11Updated 3 years ago
• HCBravoLab / metagenomeFeatures
  R package for annotating metagenomic datasets with taxonomic information
  ☆10Updated 4 years ago
• StoreyLab / edge
  R package for identifying differentially expressed genes from genome-wide gene expression profiling studies.
  ☆21Updated 5 years ago
• twbattaglia / koeken
  A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.
  ☆26Updated 7 years ago
• Bioconductor / S4Vectors
  Foundation of vector-like and list-like containers in Bioconductor
  ☆18Updated last week
• 5c077 / ExpressionDB
  App for hosting gene expression/ontology data with Shiny
  ☆17Updated 6 years ago
• Gibbons-Lab / mbtools
  R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.
  ☆22Updated 9 months ago
• yge15 / Cancer_Microbiome_Reanalyzed
  supplementary tables and files
  ☆10Updated last year
• qibebt-bioinfo / meta-storms
  Meta-Storms 2 is the standalone implementation of the Microbiome Search Engine (MSE; http://mse.ac.cn). This is the official software re…
  ☆10Updated 4 years ago