useful tools for manipulating uBiome information
☆45Dec 7, 2017Updated 8 years ago
Alternatives and similar repositories for uBiome
Users that are interested in uBiome are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- For tool creators to share their inventions that analyze, visualize, and make meaning of microbiome data.☆66Aug 15, 2016Updated 9 years ago
- For anyone who wants to share and compare their microbiome data.☆28Jun 17, 2016Updated 10 years ago
- [DEPRECATED] Logs your computer activities, a RescueTime replacement.☆15Apr 3, 2016Updated 10 years ago
- Generates a set of plots showing ubiome data over time.☆13May 12, 2019Updated 7 years ago
- A Python library for reading and writing PacBio® data files☆41May 21, 2026Updated 2 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Metagenomic profiling and phylogenetic distances via common kmers☆42Jul 12, 2021Updated 5 years ago
- Whole genome focused array SNP typer☆14Feb 2, 2026Updated 5 months ago
- Docker containers for bioinformatics with a small footprint☆23May 25, 2026Updated last month
- A list of weak Bacterial assemblies in GenBank☆18Aug 3, 2017Updated 8 years ago
- HPC pipeline for overlapping V4 16S rRNA reads generated on Illumina MiSeq☆11Sep 1, 2015Updated 10 years ago
- Python scripts for Exploratory Data Analysis of Pacific Biosciences sequence data☆18Aug 13, 2014Updated 11 years ago
- Python CLI for alignment-free genomics.☆13May 25, 2026Updated last month
- ☆12Oct 3, 2023Updated 2 years ago
- Repository of the integrated mouse gut metagenomic catalog☆20Mar 14, 2022Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Docker images of bioinformatics software☆21Jun 15, 2017Updated 9 years ago
- A hash map using the BooPHF perfect hash function☆13Sep 25, 2016Updated 9 years ago
- Dirichlet-Multinomial Bayesian Variable Selection☆14Jun 13, 2024Updated 2 years ago
- Shared k-mer content between two genomes☆18Jun 21, 2023Updated 3 years ago
- A server for maintaining high-throughput sequencing QC data☆13Aug 5, 2025Updated 11 months ago
- Find Co-Abundant Groups of Genes☆12Aug 3, 2020Updated 5 years ago
- Run Python functions locally or in the cloud. Built for computational science.☆22Oct 4, 2023Updated 2 years ago
- Bloom filter implementation in Nimrod☆16May 26, 2023Updated 3 years ago
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆15Aug 26, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Antibiotic resistance predictions in minutes on a laptop☆50Mar 7, 2019Updated 7 years ago
- 90-day Biohacker Challenge: An open-sourced biohacking & quantified-self protocol☆11Sep 10, 2016Updated 9 years ago
- A library for next generation genomics in Python 3☆18Jun 7, 2018Updated 8 years ago
- Detect contigs of complete circular genomes☆23Jun 6, 2019Updated 7 years ago
- Minimal docker image for bwa. Not developed any more.☆11Apr 26, 2015Updated 11 years ago
- Welcome to the mothur project, initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology & Imm…☆279Jan 13, 2026Updated 6 months ago
- ☆13Oct 4, 2022Updated 3 years ago
- Making Metagenomes Manageable☆12Apr 4, 2017Updated 9 years ago
- an R package to biotype a community☆14Oct 19, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- SVG based genome viewer written in javascript using D3☆33Jul 12, 2015Updated 11 years ago
- American Gut open-access data and IPython notebooks☆132Mar 17, 2017Updated 9 years ago
- Strain Prediction and Analysis with Representative SEquence☆19Dec 8, 2024Updated last year
- Solarized Dark UI theme for Atom☆10Jan 14, 2017Updated 9 years ago
- µbinfie blog☆19Jul 21, 2025Updated 11 months ago
- Resources for grounding protein families and complexes from text and describing their hierarchical relationships.☆18Mar 26, 2026Updated 3 months ago
- Classify sequencing reads using MinHash.☆48Apr 6, 2020Updated 6 years ago