Python tools for proteogenomics analysis toolkit
☆17May 23, 2026Updated 3 weeks ago
Alternatives and similar repositories for pgatk
Users that are interested in pgatk are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- python scripts for proteogenomics analysis☆10Oct 17, 2019Updated 6 years ago
- Collisional cross-section prediction for modified and multiconformational peptides☆13Apr 14, 2026Updated 2 months ago
- qpx (Quantitative Proteomics eXchange) format (aka quantms.io) a format to capture a full proteomics experiment☆23May 6, 2026Updated last month
- mzSpecLib: A standard format to exchange/distribute spectral libraries☆32Mar 27, 2026Updated 2 months ago
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆31Jun 5, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A library for QC report based on MultiQC framework☆32May 7, 2026Updated last month
- MSConnect is a Web-based integrated plateform to combine data storage/backup, process and visualization of MS-based Proteomics data.☆18Aug 19, 2025Updated 9 months ago
- A python interface to the SAGE search engine for mass spectrometry proteomics☆15May 28, 2026Updated 2 weeks ago
- Multi-Omics Peptide Generator☆30Nov 6, 2025Updated 7 months ago
- SDRF official validator and converts SDRF to pipeline configuration files☆36Jun 8, 2026Updated last week
- Democratizing ML in proteomics☆53May 6, 2026Updated last month
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆79Jun 6, 2026Updated last week
- Python client for PRIDE Archive Rest API.☆40Jun 8, 2026Updated last week
- A Deep LEArning-based Mass Spectra Embedder for spectral similarity scoring☆12Updated this week
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆15Apr 22, 2022Updated 4 years ago
- Work with trained factor models in Python☆40Oct 22, 2024Updated last year
- Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.☆15Feb 17, 2025Updated last year
- Integration ribosome profiling - mass spectrometry☆15Nov 4, 2025Updated 7 months ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆24Mar 7, 2026Updated 3 months ago
- Implementation of the MSqRob analysis of differentially expressed proteins using the Features infrastructure☆13Apr 24, 2026Updated last month
- Multi-omics factor analysis v2☆66May 21, 2026Updated 3 weeks ago
- A Comet-based, best practices proteomics pipeline.☆39Mar 21, 2024Updated 2 years ago
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆48Jun 1, 2026Updated 2 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- This is a collection of minimal code to visualize various aspects of proteomics data.☆84Jan 6, 2022Updated 4 years ago
- Navigation links (and brief descriptions) to my repositories.☆13Nov 25, 2025Updated 6 months ago
- Annotation of Genetic Variants☆31Apr 28, 2026Updated last month
- Matthew The's implementation of MaRaCluster☆11Jun 26, 2025Updated 11 months ago
- Recommendations to contenarized your bioinformatics software☆12May 30, 2018Updated 8 years ago
- Experimental plugin to integrate GPT like prompt into Nextflow☆17Apr 15, 2024Updated 2 years ago
- DL model to predict HLA peptide presentation☆16Jan 31, 2024Updated 2 years ago
- A web-browser app to visualise, interpret and prioritise genomic/transcriptomic structural variations (SVs) of multiple samples.☆14May 16, 2026Updated 3 weeks ago
- ☆13Aug 20, 2020Updated 5 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- (No maintenance) Next Generation Sequencing Simulation with SNP, Variation and Sequencing Error Integrated☆24Aug 10, 2017Updated 8 years ago
- Repository for mzIdentML and the corresponding examples☆27May 6, 2026Updated last month
- Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics☆24Apr 8, 2026Updated 2 months ago
- SUmmarizing Multiple Enrichment analysis Results☆10Nov 14, 2024Updated last year
- ☆11Oct 8, 2021Updated 4 years ago
- A reporting pipeline for visualization of immunopeptidomics MS data.☆16Nov 19, 2022Updated 3 years ago
- ☆17Updated this week