Python tools for proteogenomics analysis toolkit
☆17May 23, 2026Updated 2 months ago
Alternatives and similar repositories for pgatk
Users that are interested in pgatk are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A library for QC report based on MultiQC framework☆34Jul 19, 2026Updated last week
- quantms workflow for DIANN tool including DIA and DDA analysis☆17Jun 16, 2026Updated last month
- python scripts for proteogenomics analysis☆10Oct 17, 2019Updated 6 years ago
- mzSpecLib: A standard format to exchange/distribute spectral libraries☆32Mar 27, 2026Updated 3 months ago
- Python client for PRIDE Archive Rest API.☆40Jul 2, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Collisional cross-section prediction for modified and multiconformational peptides☆14Jul 16, 2026Updated last week
- qpx (Quantitative Proteomics eXchange) format (aka quantms.io) a format to capture a full proteomics experiment☆26Jul 18, 2026Updated last week
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆31Jul 16, 2026Updated last week
- ☆26Updated this week
- A reporting pipeline for visualization of immunopeptidomics MS data.☆16Nov 19, 2022Updated 3 years ago
- A python interface to the SAGE search engine for mass spectrometry proteomics☆15Jul 7, 2026Updated 2 weeks ago
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆51May 26, 2026Updated last month
- Democratizing ML in proteomics☆57Updated this week
- ☆16May 27, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- MSConnect is a Web-based integrated plateform to combine data storage/backup, process and visualization of MS-based Proteomics data.☆20Aug 19, 2025Updated 11 months ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆81Jul 11, 2026Updated 2 weeks ago
- DIA-NN - a universal automated software suite for DIA proteomics data analysis.☆462Jun 30, 2026Updated 3 weeks ago
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆49Updated this week
- A Deep LEArning-based Mass Spectra Embedder for spectral similarity scoring☆12Jul 17, 2026Updated last week
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆41May 6, 2024Updated 2 years ago
- Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…☆39Updated this week
- Interfacing R's Spectra package with the Python world.☆13May 12, 2026Updated 2 months ago
- ☆16Jul 2, 2026Updated 3 weeks ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Work with trained factor models in Python☆40Oct 22, 2024Updated last year
- Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.☆15Feb 17, 2025Updated last year
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆24Updated this week
- A Toolset for Chromosome X-Wide Association Studies☆13May 1, 2018Updated 8 years ago
- A Comet-based, best practices proteomics pipeline.☆40Mar 21, 2024Updated 2 years ago
- Navigation links (and brief descriptions) to my repositories.☆13Nov 25, 2025Updated 8 months ago
- A web-browser app to visualise, interpret and prioritise genomic/transcriptomic structural variations (SVs) of multiple samples.☆14May 16, 2026Updated 2 months ago
- DL model to predict HLA peptide presentation☆16Jan 31, 2024Updated 2 years ago
- This is a collection of minimal code to visualize various aspects of proteomics data.☆86Jan 6, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Multi-Omics Peptide Generator☆30Nov 6, 2025Updated 8 months ago
- Integration ribosome profiling - mass spectrometry☆15Nov 4, 2025Updated 8 months ago
- Annotation of Genetic Variants☆32Updated this week
- Methods and analysis for Garcia-Nieto, et al. Somatic mutations☆17Jan 5, 2020Updated 6 years ago
- Experimental plugin to integrate GPT like prompt into Nextflow☆17Apr 15, 2024Updated 2 years ago
- Matthew The's implementation of MaRaCluster☆11Jun 26, 2025Updated last year
- Implementation of the MSqRob analysis of differentially expressed proteins using the Features infrastructure☆13Jul 1, 2026Updated 3 weeks ago