Python tools for proteogenomics analysis toolkit
☆17May 23, 2026Updated last month
Alternatives and similar repositories for pgatk
Users that are interested in pgatk are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- python scripts for proteogenomics analysis☆10Oct 17, 2019Updated 6 years ago
- Collisional cross-section prediction for modified and multiconformational peptides☆13Apr 14, 2026Updated 2 months ago
- qpx (Quantitative Proteomics eXchange) format (aka quantms.io) a format to capture a full proteomics experiment☆24Jun 17, 2026Updated 2 weeks ago
- mzSpecLib: A standard format to exchange/distribute spectral libraries☆32Mar 27, 2026Updated 3 months ago
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆31Jun 5, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A library for QC report based on MultiQC framework☆32Jun 18, 2026Updated 2 weeks ago
- MSConnect is a Web-based integrated plateform to combine data storage/backup, process and visualization of MS-based Proteomics data.☆20Aug 19, 2025Updated 10 months ago
- A python interface to the SAGE search engine for mass spectrometry proteomics☆15Jun 26, 2026Updated last week
- Multi-Omics Peptide Generator☆30Nov 6, 2025Updated 7 months ago
- SDRF official validator and converts SDRF to pipeline configuration files☆36Jun 8, 2026Updated 3 weeks ago
- Democratizing ML in proteomics☆55May 6, 2026Updated 2 months ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆81Jun 24, 2026Updated last week
- Python client for PRIDE Archive Rest API.☆40Jun 8, 2026Updated 3 weeks ago
- A Deep LEArning-based Mass Spectra Embedder for spectral similarity scoring☆12Jun 9, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆15Apr 22, 2022Updated 4 years ago
- Work with trained factor models in Python☆40Oct 22, 2024Updated last year
- Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.☆15Feb 17, 2025Updated last year
- Integration ribosome profiling - mass spectrometry☆15Nov 4, 2025Updated 8 months ago
- Implementation of the MSqRob analysis of differentially expressed proteins using the Features infrastructure☆13Jun 29, 2026Updated last week
- Multi-omics factor analysis v2☆66May 21, 2026Updated last month
- A Comet-based, best practices proteomics pipeline.☆39Mar 21, 2024Updated 2 years ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆24Mar 7, 2026Updated 3 months ago
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆48Jun 22, 2026Updated last week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- This is a collection of minimal code to visualize various aspects of proteomics data.☆85Jan 6, 2022Updated 4 years ago
- Navigation links (and brief descriptions) to my repositories.☆13Nov 25, 2025Updated 7 months ago
- Annotation of Genetic Variants☆31Apr 28, 2026Updated 2 months ago
- Matthew The's implementation of MaRaCluster☆11Jun 26, 2025Updated last year
- Recommendations to contenarized your bioinformatics software☆12May 30, 2018Updated 8 years ago
- Experimental plugin to integrate GPT like prompt into Nextflow☆17Apr 15, 2024Updated 2 years ago
- DL model to predict HLA peptide presentation☆16Jan 31, 2024Updated 2 years ago
- A web-browser app to visualise, interpret and prioritise genomic/transcriptomic structural variations (SVs) of multiple samples.☆14May 16, 2026Updated last month
- ☆13Aug 20, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- (No maintenance) Next Generation Sequencing Simulation with SNP, Variation and Sequencing Error Integrated☆24Aug 10, 2017Updated 8 years ago
- Repository for mzIdentML and the corresponding examples☆27May 6, 2026Updated last month
- Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics☆25Apr 8, 2026Updated 2 months ago
- SUmmarizing Multiple Enrichment analysis Results☆10Nov 14, 2024Updated last year
- ☆11Oct 8, 2021Updated 4 years ago
- A reporting pipeline for visualization of immunopeptidomics MS data.☆16Nov 19, 2022Updated 3 years ago
- ☆17Jun 17, 2026Updated 2 weeks ago