BamQuery provides RNA-seq quantification for a given peptide (from 8 to 11 residues) in chosen RNA-seq samples (single or bulk).
☆13Aug 12, 2024Updated 2 years ago
Alternatives and similar repositories for BamQuery
Users that are interested in BamQuery are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Priorization of neoantigens by machine learning☆14Dec 7, 2023Updated 2 years ago
- Multi-Omics Peptide Generator☆33Nov 6, 2025Updated last year
- Python bindings to access bruker mass spec data☆13Dec 10, 2024Updated last year
- ☆10Jan 15, 2020Updated 6 years ago
- Collisional cross-section prediction for modified and multiconformational peptides☆15Nov 1, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ImmuneApp for HLA-I epitope prediction and immunopeptidome analysis☆16Sep 21, 2024Updated 2 years ago
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆67Oct 9, 2026Updated last month
- peptide-MHC modeling, binding prediction, and protein design.☆31Jul 24, 2026Updated 3 months ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆23Feb 17, 2023Updated 3 years ago
- ☆16Jul 24, 2026Updated 3 months ago
- MODELLER-based, anchor restrained, Peptide-MHC Modelling pipeline☆32Feb 16, 2026Updated 8 months ago
- Cross-Attention Mechanism for Modeling the Interaction of HLA Class II Molecules with Peptides.☆12Jan 12, 2026Updated 10 months ago
- An open-source prediction framework for peptide ion collision cross section (CCS) values with python.☆16Oct 6, 2023Updated 3 years ago
- ziglang + htslib☆22Oct 31, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Estimation of false discovery proportion for mass spectrometry proteomics data using entrapment☆37Aug 22, 2026Updated 2 months ago
- QUANtification by Distillation for ENhanced Signals with Error Regulation☆10Aug 20, 2022Updated 4 years ago
- Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors☆34Jan 27, 2026Updated 9 months ago
- Python language bindings for bwa☆13Jul 19, 2026Updated 3 months ago
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆46Mar 25, 2023Updated 3 years ago
- Peptide-MHC I binding affinity prediction☆282Updated this week
- 🐶 hlabud: HLA genotype analysis in R☆19Apr 11, 2025Updated last year
- Python client for PRIDE Archive Rest API.☆43Jul 29, 2026Updated 3 months ago
- ☆11Dec 15, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆50Oct 27, 2026Updated 2 weeks ago
- Provide programmatic access to the tonsil cell atlas datasets☆10Oct 22, 2026Updated 3 weeks ago
- Predicting immunogenic peptide recognized by TCR through ensemble deep learning☆18Apr 22, 2024Updated 2 years ago
- View point in Open source in Proteomics☆11Feb 5, 2025Updated last year
- Scripts used for the Differential NicheNet analyses in the Liver Atlas paper Guilliams et al., Cell 2022☆10Jan 12, 2022Updated 4 years ago
- A repository of datasets in ProteomeXchange annotated in SDRF, previously part of the specification☆16Updated this week
- HemoPI2: Prediction of hemolytic activity of peptides against mammalian RBCs☆18Jul 13, 2026Updated 3 months ago
- Repository for Immune Atlas Research Consortium at MMRF for storing research project code☆14Oct 3, 2025Updated last year
- Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.☆15Feb 17, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Telomerecat: The telomere computational analysis tool☆14Oct 9, 2020Updated 6 years ago
- ImmunoVerse: A pan-cancer atlas of therapeutic T cell targets☆14Nov 1, 2026Updated last week
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆71Oct 13, 2026Updated 3 weeks ago
- PRedictor of IMmunogenic Epitopes☆37Sep 24, 2025Updated last year
- PepQuery: a targeted peptide search engine☆16May 1, 2024Updated 2 years ago
- Module 4 for HKU Single-cell Workshop☆12Jul 6, 2021Updated 5 years ago
- ☆10Jul 13, 2022Updated 4 years ago
Are these results useful?