Accelerate the generation of personalized proteomes from a Variant calling format (VCF) file and a reference proteome using graphical processing units (GPUs).
☆21Apr 28, 2023Updated 3 years ago
Alternatives and similar repositories for vcf2prot
Users that are interested in vcf2prot are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A computational workflow for exitron splicing identification☆16Updated this week
- Reproducible Workflows, curated at the Fred Hutch☆12Jan 21, 2026Updated 5 months ago
- PGx supports proteogenomic intregration of mass spectrometry (MS) proteomics data with next generation sequencing (NGS) by mapping identi…☆10Jul 9, 2024Updated last year
- 🐶 hlabud: HLA genotype analysis in R☆19Apr 11, 2025Updated last year
- Rendering protein mutation movies from predicted 3D structures☆20Dec 7, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆133Apr 10, 2026Updated 2 months ago
- ☆22Jul 14, 2023Updated 2 years ago
- Ableton remote script to load your devices via clip triggers☆10Apr 12, 2020Updated 6 years ago
- A Toolset for Chromosome X-Wide Association Studies☆13May 1, 2018Updated 8 years ago
- Genotyping Immunoglobulin Heavy Chain Variable Genes using Short Read Data☆12May 9, 2025Updated last year
- POUTINE: a next-generation homoplasy counting method for genome-wide association studies.☆10Mar 9, 2023Updated 3 years ago
- ☆21Apr 20, 2026Updated 2 months ago
- Learning the Variant Call Format☆151Aug 4, 2025Updated 10 months ago
- flopp is a software package for single individual haplotype phasing of polyploid organisms from long read sequencing.☆37Nov 3, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆24Sep 12, 2022Updated 3 years ago
- Code for holographic machine learning of proteins☆25Oct 29, 2024Updated last year
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14May 7, 2024Updated 2 years ago
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆12Jul 8, 2021Updated 4 years ago
- Collection of diy synth projects☆12May 6, 2025Updated last year
- ☆14Oct 27, 2025Updated 8 months ago
- Genotyping of copy number sensitive allele-specific haplotypes☆28Jun 18, 2026Updated 2 weeks ago
- openASO is a project designed to identify regulatory regions of an RNA that can be targeted by antisense oligonucleotides.☆14Sep 30, 2021Updated 4 years ago
- Scalable genomic analysis pipelines, written in WDL☆12Jun 2, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Hierarchical annotation of immune cells n scRNA-Seq data based on ssGSEA algorithm.☆12May 31, 2024Updated 2 years ago
- A library to assist with a variety of -omic analyses. Included are tools for proteomics, transcriptomics, and genomics.☆16Aug 3, 2023Updated 2 years ago
- ☆15Apr 22, 2022Updated 4 years ago
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆12Nov 15, 2024Updated last year
- Cookiecutter profile for making a NextFlow-based bioinformatics tool☆17Jul 8, 2024Updated last year
- SossMLJ makes it easy to build MLJ machines from user-defined models from the Soss probabilistic programming language☆15Aug 31, 2025Updated 10 months ago
- Python library for analyzing mass spectrometry proteomics data.☆15Mar 20, 2024Updated 2 years ago
- coding exercise using TCGA immune infiltration data☆11Feb 2, 2024Updated 2 years ago
- scID☆14Oct 21, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A collection of DaisyDuino code examples for the Daisy Patch.Init() Eurorack module☆16Dec 29, 2022Updated 3 years ago
- Tutorials as used in the user meetings. (Please assign a git tag for the revision used for the UM)☆13May 20, 2025Updated last year
- starmie: plotting and inference for population structure models☆15Sep 20, 2018Updated 7 years ago
- quickLD, a large-scale, long-range Linkage Disequilibrium analysis tool utilizing parallel CPU, GPU or heterogeneous computing.☆10Jun 10, 2022Updated 4 years ago
- Textbook.☆12Jan 26, 2026Updated 5 months ago
- Computer aided proximal decaging as a universal strategy for temporal protein activation☆28May 26, 2025Updated last year
- A hidden Markov model for detecting segments of shared ancestry (identity by descent)☆12Dec 15, 2023Updated 2 years ago