Accelerate the generation of personalized proteomes from a Variant calling format (VCF) file and a reference proteome using graphical processing units (GPUs).
☆21Apr 28, 2023Updated 2 years ago
Alternatives and similar repositories for vcf2prot
Users that are interested in vcf2prot are comparing it to the libraries listed below
Sorting:
- A computational workflow for exitron splicing identification☆14Aug 30, 2024Updated last year
- A minimal PyTorch implementation of BERT (Bidirectional Encoder Representations from Transformers)☆12Mar 20, 2023Updated 3 years ago
- Reproducible Workflows, curated at the Fred Hutch☆12Jan 21, 2026Updated 2 months ago
- Junction centric alternative splicing translator☆21Oct 31, 2022Updated 3 years ago
- PGx supports proteogenomic intregration of mass spectrometry (MS) proteomics data with next generation sequencing (NGS) by mapping identi…☆10Jul 9, 2024Updated last year
- 🐶 hlabud: HLA genotype analysis in R☆17Apr 11, 2025Updated 11 months ago
- Rendering protein mutation movies from predicted 3D structures☆20Dec 7, 2023Updated 2 years ago
- ☆23Jul 14, 2023Updated 2 years ago
- Genotyping Immunoglobulin Heavy Chain Variable Genes using Short Read Data☆12May 9, 2025Updated 10 months ago
- Ableton remote script to load your devices via clip triggers☆10Apr 12, 2020Updated 5 years ago
- A Toolset for Chromosome X-Wide Association Studies☆12May 1, 2018Updated 7 years ago
- Learning the Variant Call Format☆149Aug 4, 2025Updated 7 months ago
- flopp is a software package for single individual haplotype phasing of polyploid organisms from long read sequencing.☆37Nov 3, 2023Updated 2 years ago
- Code for holographic machine learning of proteins☆24Oct 29, 2024Updated last year
- A set of packages to read and write common file formats produced by computational biology software.☆10Jan 21, 2014Updated 12 years ago
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14May 7, 2024Updated last year
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆11Jul 8, 2021Updated 4 years ago
- A collection of DaisyDuino code examples for the Daisy Patch.Init() Eurorack module☆14Dec 29, 2022Updated 3 years ago
- ☆13Oct 27, 2025Updated 4 months ago
- Collection of diy synth projects☆12May 6, 2025Updated 10 months ago
- Genotyping of copy number sensitive allele-specific haplotypes☆27Nov 6, 2025Updated 4 months ago
- Leaping through tree space: continuous phylogenetic inference for rooted and unrooted trees☆12Sep 6, 2023Updated 2 years ago
- Scalable genomic analysis pipelines, written in WDL☆11Mar 11, 2026Updated last week
- A library to assist with a variety of -omic analyses. Included are tools for proteomics, transcriptomics, and genomics.☆16Aug 3, 2023Updated 2 years ago
- ☆14Apr 22, 2022Updated 3 years ago
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆11Nov 15, 2024Updated last year
- A TUI and CLI tool for inspecting Claude Code conversation history and compaction events.☆65Mar 5, 2026Updated 2 weeks ago
- SossMLJ makes it easy to build MLJ machines from user-defined models from the Soss probabilistic programming language☆15Aug 31, 2025Updated 6 months ago
- Cookiecutter profile for making a NextFlow-based bioinformatics tool☆17Jul 8, 2024Updated last year
- IsoVis enables fast and informative visualization of isoform structures and expression levels.☆13Feb 5, 2026Updated last month
- Python library for analyzing mass spectrometry proteomics data.☆14Mar 20, 2024Updated 2 years ago
- scID☆14Oct 21, 2021Updated 4 years ago
- coding exercise using TCGA immune infiltration data☆11Feb 2, 2024Updated 2 years ago
- Tutorials as used in the user meetings. (Please assign a git tag for the revision used for the UM)☆14May 20, 2025Updated 10 months ago
- Manage Files Across Sessions☆13Oct 30, 2025Updated 4 months ago
- quickLD, a large-scale, long-range Linkage Disequilibrium analysis tool utilizing parallel CPU, GPU or heterogeneous computing.☆10Jun 10, 2022Updated 3 years ago
- Textbook.☆12Jan 26, 2026Updated last month
- Computer aided proximal decaging as a universal strategy for temporal protein activation☆28May 26, 2025Updated 9 months ago
- A hidden Markov model for detecting segments of shared ancestry (identity by descent)☆12Dec 15, 2023Updated 2 years ago