Accelerate the generation of personalized proteomes from a Variant calling format (VCF) file and a reference proteome using graphical processing units (GPUs).
☆21Apr 28, 2023Updated 3 years ago
Alternatives and similar repositories for vcf2prot
Users that are interested in vcf2prot are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A computational workflow for exitron splicing identification☆16Jul 17, 2026Updated last month
- Reproducible Workflows, curated at the Fred Hutch☆12Jan 21, 2026Updated 7 months ago
- Junction centric alternative splicing translator☆22May 22, 2026Updated 3 months ago
- 🐶 hlabud: HLA genotype analysis in R☆19Apr 11, 2025Updated last year
- PGx supports proteogenomic intregration of mass spectrometry (MS) proteomics data with next generation sequencing (NGS) by mapping identi…☆10Jul 9, 2024Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆136Apr 10, 2026Updated 4 months ago
- ☆22Jul 14, 2023Updated 3 years ago
- ☆21Apr 20, 2026Updated 4 months ago
- Learning the Variant Call Format☆151Aug 4, 2025Updated last year
- Interactive Protein Sequence VIsualization/Viewer - Interactive Circos☆11Jun 5, 2026Updated 2 months ago
- flopp is a software package for single individual haplotype phasing of polyploid organisms from long read sequencing.☆37Nov 3, 2023Updated 2 years ago
- Code for holographic machine learning of proteins☆25Oct 29, 2024Updated last year
- ☆25Sep 12, 2022Updated 3 years ago
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14May 7, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- openASO is a project designed to identify regulatory regions of an RNA that can be targeted by antisense oligonucleotides.☆14Sep 30, 2021Updated 4 years ago
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆12Jul 8, 2021Updated 5 years ago
- Collection of diy synth projects☆12May 6, 2025Updated last year
- Scalable genomic analysis pipelines, written in WDL☆12Aug 21, 2026Updated last week
- Hierarchical annotation of immune cells n scRNA-Seq data based on ssGSEA algorithm.☆12May 31, 2024Updated 2 years ago
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆12Nov 15, 2024Updated last year
- A library to assist with a variety of -omic analyses. Included are tools for proteomics, transcriptomics, and genomics.☆16Aug 3, 2023Updated 3 years ago
- ☆16Sep 1, 2023Updated 2 years ago
- SossMLJ makes it easy to build MLJ machines from user-defined models from the Soss probabilistic programming language☆15Aug 31, 2025Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Chromatin ACcessibility and Transcriptomics Unifying Software☆20Oct 25, 2024Updated last year
- coding exercise using TCGA immune infiltration data☆11Feb 2, 2024Updated 2 years ago
- RAG application to answer questions about PDF documents using LLMs.☆16Dec 1, 2023Updated 2 years ago
- scID☆14Oct 21, 2021Updated 4 years ago
- A collection of DaisyDuino code examples for the Daisy Patch.Init() Eurorack module☆16Dec 29, 2022Updated 3 years ago
- Python library for analyzing mass spectrometry proteomics data.☆15Mar 20, 2024Updated 2 years ago
- ☆11Feb 14, 2023Updated 3 years ago
- iFeatureOmega is a comprehensive platform for generating, analyzing and visualizing more than 170 representations for biological sequence…☆33Aug 16, 2023Updated 3 years ago
- PRedictor of IMmunogenic Epitopes☆35Sep 24, 2025Updated 11 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- starmie: plotting and inference for population structure models☆15Sep 20, 2018Updated 7 years ago
- quickLD, a large-scale, long-range Linkage Disequilibrium analysis tool utilizing parallel CPU, GPU or heterogeneous computing.☆10Jun 10, 2022Updated 4 years ago
- Textbook.☆12Jan 26, 2026Updated 7 months ago
- A hidden Markov model for detecting segments of shared ancestry (identity by descent)☆12Dec 15, 2023Updated 2 years ago
- Python tools for proteogenomics analysis toolkit☆17May 23, 2026Updated 3 months ago
- Computer aided proximal decaging as a universal strategy for temporal protein activation☆28May 26, 2025Updated last year
- ☆11Sep 7, 2023Updated 2 years ago