An AnnData-based framework for integrated proteomics analysis
☆30Oct 29, 2026Updated this week
Alternatives and similar repositories for proteopy
Users that are interested in proteopy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Search- and quantification-engine agnostic biological interpretation of proteomics data☆43Oct 19, 2026Updated last week
- Analysis framework for morphological profiling data☆14Updated this week
- Dataloader for common proteomics search engine outputs into AnnData format☆14Mar 25, 2026Updated 7 months ago
- A modern Python library for converting Mass Spectrometry Imaging (MSI) data into standardized SpatialData/Zarr format, enabling seamless …☆26Oct 23, 2026Updated last week
- Sample representation benchmark for single-cell data☆15Jun 12, 2026Updated 4 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Nextflow version of Sopa - spatial omics pipeline and analysis☆22Oct 20, 2026Updated last week
- AnnNet (Annotated Network) is a unified, high-expressivity graph platform designed to bring the convenience of AnnData-style annotated co…☆25Oct 11, 2026Updated 2 weeks ago
- Pareto Task Inference in Python☆23Oct 19, 2026Updated last week
- qpx (Quantitative Proteomics eXchange) format (aka quantms.io) a format to capture a full proteomics experiment☆27Updated this week
- A toolkit to test, validate, and improve agentic skills.☆18Updated this week
- Agentic plugins to annotate SDRF using Claude; Codex; Cursor; Gemini☆19Updated this week
- ☆10Mar 14, 2025Updated last year
- SCALLOPS (Scalable Library for Optical Pooled Screens) is a comprehensive Python package designed to streamline and scale the analysis of…☆16Updated this week
- Links between modalities in mudata☆17Oct 16, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A Python package for unsupervised analysis of spatial (prote)omics data.☆19Updated this week
- ☆20Sep 17, 2026Updated last month
- A multimodal, agentic AI framework that captures and shares practical expertise by linking written instructions to real-world laboratory …☆25Dec 2, 2025Updated 10 months ago
- Single-cell differential expression☆22Oct 18, 2026Updated last week
- Python toolkit for LC-MS/MS Proteomics analysis based on MuData☆15Updated this week
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆113Updated this week
- A library for QC report based on MultiQC framework☆35Oct 23, 2026Updated last week
- Single-cell morphological analysis☆16Apr 23, 2026Updated 6 months ago
- High quality in silico spectral library generation for data-independent acquisition proteomics☆26Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆39Jul 11, 2025Updated last year
- High-performance Rust + Python readers for mass spectrometry / proteomics raw data.☆15Updated this week
- Pattern Analysis of SpaTial omics datA☆13Jun 13, 2025Updated last year
- Package for the analysis of Transcripts outside segmented cells in ST data☆32Updated this week
- ☆28Updated this week
- ☆24Updated this week
- ☆45Updated this week
- Spending less time on SDRF creates more time for amazing research☆10Oct 15, 2025Updated last year
- Powerful and lightweight package to identify tissue compartments in spatial transcriptomics datasets.☆22Jun 9, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆80Sep 20, 2026Updated last month
- Facilitating the use of Deep Visual Proteomics☆23Updated this week
- Milume: explore spatial biology in your notebook. Layer images, cells, and transcripts in 3D, in one reactive widget.☆32Updated this week
- Interactive and integrated analysis of multiplexed tissue microarrays☆15Updated this week
- PepQuery: a targeted peptide search engine☆16May 1, 2024Updated 2 years ago
- ☆21Oct 15, 2026Updated 2 weeks ago
- A datastructure for EHR data☆15Updated this week