An AnnData-based framework for integrated proteomics analysis
☆30Sep 7, 2026Updated last week
Alternatives and similar repositories for proteopy
Users that are interested in proteopy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Search- and quantification-engine agnostic biological interpretation of proteomics data☆37Updated this week
- A modern Python library for converting Mass Spectrometry Imaging (MSI) data into standardized SpatialData/Zarr format, enabling seamless …☆25Updated this week
- Nextflow version of Sopa - spatial omics pipeline and analysis☆20Updated this week
- qpx (Quantitative Proteomics eXchange) format (aka quantms.io) a format to capture a full proteomics experiment☆26Updated this week
- Pareto Task Inference in Python☆23Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A Python package for unsupervised analysis of spatial (prote)omics data.☆19Jul 23, 2026Updated last month
- Dataloader for common proteomics search engine outputs into AnnData format☆14Mar 25, 2026Updated 5 months ago
- A multimodal, agentic AI framework that captures and shares practical expertise by linking written instructions to real-world laboratory …☆25Dec 2, 2025Updated 9 months ago
- ☆19Updated this week
- Single-cell differential expression☆19Apr 23, 2026Updated 4 months ago
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆39Jul 11, 2025Updated last year
- A library for QC report based on MultiQC framework☆34Updated this week
- High quality in silico spectral library generation for data-independent acquisition proteomics☆23Aug 17, 2026Updated last month
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆113Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆28Sep 12, 2026Updated last week
- Facilitating the use of Deep Visual Proteomics☆17Updated this week
- ☆44Updated this week
- Sample representation benchmark for single-cell data☆15Jun 12, 2026Updated 3 months ago
- Package for the analysis of Transcripts outside segmented cells in ST data☆31Updated this week
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆81Aug 22, 2026Updated 3 weeks ago
- ☆17Jul 2, 2026Updated 2 months ago
- Interactive and integrated analysis of multiplexed tissue microarrays☆15Updated this week
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆80Sep 4, 2026Updated 2 weeks ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Simple scVI implementation☆13Aug 31, 2026Updated 2 weeks ago
- ☆17Sep 11, 2026Updated last week
- Infrastructure of AlphaX ecosystem☆59Updated this week
- Scalable framework for integrating single-cell omics with genetic data using AnnData.☆21Updated this week
- Estimation of false discovery proportion for mass spectrometry proteomics data using entrapment☆36Aug 22, 2026Updated 3 weeks ago
- Single-cell spatial omics analysis that makes you happy!☆75Updated this week
- ☆26Jul 15, 2026Updated 2 months ago
- ☆38Sep 11, 2026Updated last week
- LLM-powered personalized daily lists of scientific papers☆135Jan 13, 2026Updated 8 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆31Updated this week
- ☆15Jun 27, 2025Updated last year
- Conveniently process a dictionary of anndatas☆23Apr 17, 2026Updated 5 months ago
- Democratizing ML in proteomics☆56Updated this week
- Nextflow implementation of scAutoQC pipeline☆12Jul 9, 2026Updated 2 months ago
- k-NN-based mapping of cells across representations to transfer labels, embeddings, and expression values.☆16Updated this week
- Learning cell communication from spatial graphs of cells☆121Jan 15, 2024Updated 2 years ago