A Python module that produces image patches and annotation masks from whole slide images for deep learning in digital pathology.
☆80Jun 21, 2022Updated 3 years ago
Alternatives and similar repositories for SlideSeg
Users that are interested in SlideSeg are comparing it to the libraries listed below
Sorting:
- Whole Slide Digital Pathology Image Tissue Localization☆45Oct 3, 2023Updated 2 years ago
- Digital Pathology Whole Slide Image Analysis Toolbox☆53Apr 2, 2023Updated 2 years ago
- Python package for dealing with whole slide images (.svs) for machine learning, particularly for fast prototyping. Includes patch samplin…☆164Jul 25, 2024Updated last year
- Full package for applying deep learning to virtual slides.☆72Sep 7, 2018Updated 7 years ago
- SlideRunner is a tool for massive cell annotations in whole slide images☆80Jul 29, 2025Updated 7 months ago
- Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed computational pathology pipelines.☆55Nov 22, 2022Updated 3 years ago
- a toolbox for manipulation of digital pathology slides and annotations☆19Aug 11, 2020Updated 5 years ago
- Python scripts for automatic Whole-Slide Image preprocessing.☆36May 18, 2021Updated 4 years ago
- Rule-Based Thyroid Whole Slide Image Diagnosis☆10Aug 12, 2020Updated 5 years ago
- A deep learning approach to predicting breast tumor proliferation scores for the TUPAC16 challenge☆208Mar 7, 2019Updated 6 years ago
- Program for the analysis and visualization of whole-slide images in digital pathology☆664Sep 12, 2023Updated 2 years ago
- PAIP2019: Liver Cancer Segmentation☆35Oct 3, 2023Updated 2 years ago
- Python Whole Slide Image Preprocessing☆298Nov 15, 2022Updated 3 years ago
- Handling whole-slide images with region-level annotations.☆10Jan 14, 2019Updated 7 years ago
- 首个临床级别的 AI 系统可用源码☆69Dec 17, 2021Updated 4 years ago
- Scripts for https://www.nature.com/articles/s41598-018-27707-4, using Convolutional Neural Network to detect lung cancer tumor area☆51Apr 8, 2021Updated 4 years ago
- Delete the label from a whole-slide image☆65Mar 18, 2021Updated 4 years ago
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆111Nov 8, 2025Updated 3 months ago
- A Python library for deep learning on whole-slide images☆52Nov 5, 2021Updated 4 years ago
- A Python toolkit for pathology image analysis algorithms.☆465Jan 12, 2026Updated last month
- Pathologist-level interpretable whole-slide cancer diagnosis with deep learning☆131Jun 25, 2019Updated 6 years ago
- Topological Feature Extraction on Whole Slide Images using Graph Neural Networks.☆22Aug 17, 2020Updated 5 years ago
- Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma sli…☆511Jun 7, 2024Updated last year
- A code for extracting annotated regions from whole slide images (WSIs) anotated in Aperio Imagescope☆12Jul 3, 2020Updated 5 years ago
- ☆13Aug 13, 2025Updated 6 months ago
- H&E ROI-Level and WSI-Level Nuclei Segmentation with HoVer-Net☆10Jul 30, 2024Updated last year
- Corresponding code of 'Quiros A.C., Murray-Smith R., Yuan K. Pathology GAN: Learning deep representations of cancer tissue. Proceedings o…☆98Aug 17, 2021Updated 4 years ago
- Codes for Fast GPU-Enabled Color Normalization of Whole Slide Images in Digital Pathology☆75Mar 19, 2020Updated 5 years ago
- Computational Pathology Toolbox developed by TIA Centre, University of Warwick.☆509Updated this week
- Open source whole slide image preparation and viewing pipeline☆13Mar 16, 2020Updated 5 years ago
- This is the official code for the paper Learning Represenations with Contrastive Self-Supervised Learning for Histopathology Applications☆13Aug 17, 2022Updated 3 years ago
- Re-stained whole slide image alignment☆36Oct 16, 2023Updated 2 years ago
- ☆50May 9, 2022Updated 3 years ago
- A pyqt5 widget for viewing whole-slide images with Openslide☆22Feb 3, 2018Updated 8 years ago
- Weakly Supervised Mitosis Detection in Breast Histopathology Images using Concentric Loss☆25Nov 14, 2019Updated 6 years ago
- Unofficial implementation for ScanNet (a fast WSI prediction method) in PyTorch.☆21Oct 3, 2023Updated 2 years ago
- Histopathology Image Analysis☆93Jul 6, 2023Updated 2 years ago
- ☆20Dec 20, 2022Updated 3 years ago
- List of academic institutes/companies working on computer-based digital pathology image analysis☆45Aug 7, 2025Updated 6 months ago