btcrabb / SlideSegLinks
A Python module that produces image patches and annotation masks from whole slide images for deep learning in digital pathology.
☆80Updated 3 years ago
Alternatives and similar repositories for SlideSeg
Users that are interested in SlideSeg are comparing it to the libraries listed below
Sorting:
- Whole Slide Digital Pathology Image Tissue Localization☆45Updated 2 years ago
- An implementation of Unet for pytorch designed for digital pathology segmentation☆127Updated 3 years ago
- SlideRunner is a tool for massive cell annotations in whole slide images☆80Updated 6 months ago
- Python package for dealing with whole slide images (.svs) for machine learning, particularly for fast prototyping. Includes patch samplin…☆164Updated last year
- Full package for applying deep learning to virtual slides.☆72Updated 7 years ago
- Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed computational pathology pipelines.☆55Updated 3 years ago
- Survival Convolutional Neural Networks☆67Updated 2 years ago
- Codes for Fast GPU-Enabled Color Normalization of Whole Slide Images in Digital Pathology☆75Updated 5 years ago
- A deep learning approach to predicting breast tumor proliferation scores for the TUPAC16 challenge☆209Updated 6 years ago
- Use streaming to train whole-slides images with single image-level labels, by reducing GPU memory requirements with 99%.☆78Updated 3 years ago
- Python scripts for automatic Whole-Slide Image preprocessing.☆36Updated 4 years ago
- HistoSegNet: Semantic Segmentation of Histological Tissue Type in Whole Slide Images (ICCV 2019)☆95Updated 6 years ago
- Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay☆76Updated last year
- Multi-Instance-Learning to check breast cancer. An implementation of Patch-based Convolutional Neural Network for Whole Slide Tissue Imag…☆51Updated 8 years ago
- CNN based segmentation codes☆48Updated 3 years ago
- Scripts for https://www.nature.com/articles/s41598-018-27707-4, using Convolutional Neural Network to detect lung cancer tumor area☆51Updated 4 years ago
- Official code for "Self-Supervised driven Consistency Training for Annotation Efficient Histopathology Image Analysis" Published in Medic…☆61Updated 3 years ago
- Interactive Segmentation of Nucleus☆67Updated 3 years ago
- Pathologist-level interpretable whole-slide cancer diagnosis with deep learning☆131Updated 6 years ago
- Deep Convolutional Gaussian Mixture Model for Stain-Color Normalization in Histopathological H&E Images☆82Updated 4 years ago
- Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering☆111Updated 2 years ago
- ☆30Updated 6 years ago
- List of academic institutes/companies working on computer-based digital pathology image analysis☆45Updated 6 months ago
- predict microsatellite status from hematoxylin-eosin histology of gastrointestinal cancer☆102Updated 6 years ago
- Corresponding code of 'Quiros A.C., Murray-Smith R., Yuan K. Pathology GAN: Learning deep representations of cancer tissue. Proceedings o…☆98Updated 4 years ago
- Digital Pathology Whole Slide Image Analysis Toolbox☆53Updated 2 years ago
- This repository contains the implementation of TILAb-score as described in the original paper.☆18Updated 6 years ago
- Unofficial implementation for ScanNet (a fast WSI prediction method) in PyTorch.☆21Updated 2 years ago
- cGAN-based Multi Organ Nuclei Segmentation☆195Updated 3 years ago
- This repository contains the code necessary in order to reproduce the work contained in the submitted paper: "Segmentation of Nuclei in H…☆53Updated 6 years ago