SlideRunner is a tool for massive cell annotations in whole slide images
☆80Jul 29, 2025Updated 6 months ago
Alternatives and similar repositories for SlideRunner
Users that are interested in SlideRunner are comparing it to the libraries listed below
Sorting:
- A Python module that produces image patches and annotation masks from whole slide images for deep learning in digital pathology.☆80Jun 21, 2022Updated 3 years ago
- A pyqt5 widget for viewing whole-slide images with Openslide☆22Feb 3, 2018Updated 8 years ago
- CytoBrowser, a JavaScript and Node.js driven environment for fast and accessible collaborative online visualization, assessment, and anno…☆20Feb 15, 2026Updated last week
- Large-Scale Canine Cutaneous Mast Cell Tumor Dataset for Mitotic Figure Assessment on Whole Slide Images☆30Jun 9, 2025Updated 8 months ago
- A Fast Whole-slide image Annotation Tool (FWAT) for conducting painless studies requiring annotations on whole-slide images.☆11Jun 22, 2018Updated 7 years ago
- Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024☆142Aug 5, 2021Updated 4 years ago
- Python package for dealing with whole slide images (.svs) for machine learning, particularly for fast prototyping. Includes patch samplin…☆164Jul 25, 2024Updated last year
- Open source whole slide image preparation and viewing pipeline☆13Mar 16, 2020Updated 5 years ago
- Full package for applying deep learning to virtual slides.☆72Sep 7, 2018Updated 7 years ago
- Delete the label from a whole-slide image☆65Mar 18, 2021Updated 4 years ago
- A deep learning approach to predicting breast tumor proliferation scores for the TUPAC16 challenge☆208Mar 7, 2019Updated 6 years ago
- The official deployment of the Digital Slide Archive and HistomicsTK.☆134Updated this week
- Python tool for stitching histopathology tissue fragments into artificial whole-mounts.☆23Dec 5, 2025Updated 2 months ago
- Program for the analysis and visualization of whole-slide images in digital pathology☆664Sep 12, 2023Updated 2 years ago
- An open source online platform for collaborative image labeling of almost everything☆62Updated this week
- Python Whole Slide Image Preprocessing☆298Nov 15, 2022Updated 3 years ago
- Cytomine Community Edition Legacy☆35Oct 1, 2025Updated 4 months ago
- Interoperable web-based DICOM slide microscopy viewer and annotation tool☆157Feb 20, 2026Updated last week
- A Python toolkit for pathology image analysis algorithms.☆465Jan 12, 2026Updated last month
- An implementation of Unet for pytorch designed for digital pathology segmentation☆127Aug 23, 2022Updated 3 years ago
- HistoQC is an open-source quality control tool for digital pathology slides☆318Dec 10, 2025Updated 2 months ago
- Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed computational pathology pipelines.☆55Nov 22, 2022Updated 3 years ago
- Digital Pathology Whole Slide Image Analysis Toolbox☆53Apr 2, 2023Updated 2 years ago
- Code accompanying the paper Neural Image Compression for Gigapixel Histopathology Image Analysis☆49Jun 6, 2023Updated 2 years ago
- Intelligent data partitioning using quality control metrics☆19Jun 10, 2025Updated 8 months ago
- a toolbox for manipulation of digital pathology slides and annotations☆19Aug 11, 2020Updated 5 years ago
- Python package for reading DICOM WSI file sets.☆48Dec 31, 2025Updated last month
- Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay☆76Feb 20, 2026Updated last week
- An ITK ImageIO module for the OpenSlide library.☆12Nov 11, 2025Updated 3 months ago
- Whole Slide Image (WSI) Viewer written in Python (using Qt and OpenSlide)☆10Feb 12, 2020Updated 6 years ago
- Large-Scale Canine Mammary Carcinoma Dataset for Mitotic Figure Assessment on Whole Slide Images☆21Jun 9, 2025Updated 8 months ago
- ☆16Feb 18, 2025Updated last year
- Pan-cancer tils analysis study by Hongming Xu☆14Oct 29, 2020Updated 5 years ago
- ☆20Dec 20, 2022Updated 3 years ago
- List of academic institutes/companies working on computer-based digital pathology image analysis☆45Aug 7, 2025Updated 6 months ago
- Whole Slide Image (WSI) Processing Library for Histopathological / Cytopathological Machine Learning Tasks☆25Sep 8, 2023Updated 2 years ago
- Segmenting WSIs using Deep Convolutional Neural Networks☆19Aug 9, 2018Updated 7 years ago
- This package provides tools for training supervised machine learning models for computational pathology tasks using tile-level embeddings…☆43May 12, 2025Updated 9 months ago
- Handling whole-slide images with region-level annotations.☆10Jan 14, 2019Updated 7 years ago