SlideRunner is a tool for massive cell annotations in whole slide images
☆80Jul 29, 2025Updated 10 months ago
Alternatives and similar repositories for SlideRunner
Users that are interested in SlideRunner are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A pyqt5 widget for viewing whole-slide images with Openslide☆22Feb 3, 2018Updated 8 years ago
- Large-Scale Canine Cutaneous Mast Cell Tumor Dataset for Mitotic Figure Assessment on Whole Slide Images☆31Jun 9, 2025Updated 11 months ago
- A Python module that produces image patches and annotation masks from whole slide images for deep learning in digital pathology.☆80Jun 21, 2022Updated 3 years ago
- An open source online platform for collaborative image labeling of almost everything☆62May 29, 2026Updated last week
- Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024☆142Aug 5, 2021Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Large-Scale Canine Mammary Carcinoma Dataset for Mitotic Figure Assessment on Whole Slide Images☆22Jun 9, 2025Updated 11 months ago
- Python package for dealing with whole slide images (.svs) for machine learning, particularly for fast prototyping. Includes patch samplin…☆166Jul 25, 2024Updated last year
- Open source whole slide image preparation and viewing pipeline☆13Mar 16, 2020Updated 6 years ago
- A Fast Whole-slide image Annotation Tool (FWAT) for conducting painless studies requiring annotations on whole-slide images.☆11Jun 22, 2018Updated 7 years ago
- Delete the label from a whole-slide image☆65Mar 18, 2021Updated 5 years ago
- The official deployment of the Digital Slide Archive and HistomicsTK.☆136Updated this week
- Interoperable web-based DICOM slide microscopy viewer and annotation tool☆163May 20, 2026Updated 2 weeks ago
- A deep learning approach to predicting breast tumor proliferation scores for the TUPAC16 challenge☆210Mar 7, 2019Updated 7 years ago
- Program for the analysis and visualization of whole-slide images in digital pathology☆675Sep 12, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- CytoBrowser, a JavaScript and Node.js driven environment for fast and accessible collaborative online visualization, assessment, and anno…☆20Updated this week
- Python Whole Slide Image Preprocessing☆301Nov 15, 2022Updated 3 years ago
- HistoQC is an open-source quality control tool for digital pathology slides☆326Apr 13, 2026Updated last month
- Digital Pathology Whole Slide Image Analysis Toolbox☆54Apr 2, 2023Updated 3 years ago
- A Python toolkit for pathology image analysis algorithms.☆472Apr 6, 2026Updated 2 months ago
- An implementation of Unet for pytorch designed for digital pathology segmentation☆127Aug 23, 2022Updated 3 years ago
- This package provides tools for training supervised machine learning models for computational pathology tasks using tile-level embeddings…☆46May 12, 2025Updated last year
- Intelligent data partitioning using quality control metrics☆18Jun 10, 2025Updated 11 months ago
- a toolbox for manipulation of digital pathology slides and annotations☆19Aug 11, 2020Updated 5 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Whole Slide Image (WSI) Viewer written in Python (using Qt and OpenSlide)☆10Feb 12, 2020Updated 6 years ago
- Cytomine Community Edition Legacy☆35Oct 1, 2025Updated 8 months ago
- Python tool for stitching histopathology tissue fragments into artificial whole-mounts.☆23Dec 5, 2025Updated 6 months ago
- An ITK ImageIO module for the OpenSlide library.☆12Apr 23, 2026Updated last month
- ☆17Feb 18, 2025Updated last year
- Whole Slide Image (WSI) Processing Library for Histopathological / Cytopathological Machine Learning Tasks☆25Sep 8, 2023Updated 2 years ago
- ☆22Dec 20, 2022Updated 3 years ago
- Accelerate ingestion/transformation of pathology images into DICOMWeb☆27Updated this week
- SlideJ: an ImageJ plugin for WSI processing☆16Nov 7, 2019Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed computational pathology pipelines.☆55Nov 22, 2022Updated 3 years ago
- Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay☆75Feb 20, 2026Updated 3 months ago
- Deep learning survival models☆118Dec 27, 2022Updated 3 years ago
- Generation of synthetic artefacts / digital pathology☆15Jun 22, 2021Updated 4 years ago
- Python package for reading DICOM WSI file sets.☆49May 30, 2026Updated last week
- MItosis DOmain Generalization Challenge 2021/2022☆14Jun 19, 2022Updated 3 years ago
- Tools for computational pathology☆452Apr 14, 2026Updated last month