zhaoxuanma / Deeplearning-digital-pathologyLinks
Full package for applying deep learning to virtual slides.
☆71Updated 7 years ago
Alternatives and similar repositories for Deeplearning-digital-pathology
Users that are interested in Deeplearning-digital-pathology are comparing it to the libraries listed below
Sorting:
- Whole Slide Digital Pathology Image Tissue Localization☆45Updated 2 years ago
- A Python module that produces image patches and annotation masks from whole slide images for deep learning in digital pathology.☆80Updated 3 years ago
- An implementation of Unet for pytorch designed for digital pathology segmentation☆126Updated 3 years ago
- AI-based pathology predicts origins for cancers of unknown primary - Nature☆175Updated 3 years ago
- Python package for dealing with whole slide images (.svs) for machine learning, particularly for fast prototyping. Includes patch samplin…☆164Updated last year
- Python scripts for automatic Whole-Slide Image preprocessing.☆36Updated 4 years ago
- Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay☆73Updated 9 months ago
- Scripts for https://www.nature.com/articles/s41598-018-27707-4, using Convolutional Neural Network to detect lung cancer tumor area☆51Updated 4 years ago
- Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed computational pathology pipelines.☆55Updated 2 years ago
- predict microsatellite status from hematoxylin-eosin histology of gastrointestinal cancer☆103Updated 6 years ago
- Codes for Fast GPU-Enabled Color Normalization of Whole Slide Images in Digital Pathology☆75Updated 5 years ago
- HistoSegNet: Semantic Segmentation of Histological Tissue Type in Whole Slide Images (ICCV 2019)☆94Updated 5 years ago
- Survival Convolutional Neural Networks☆68Updated 2 years ago
- A pipeline to segment tissue from the background in histological images☆70Updated 2 years ago
- SlideRunner is a tool for massive cell annotations in whole slide images☆79Updated 2 months ago
- A deep learning approach to predicting breast tumor proliferation scores for the TUPAC16 challenge☆208Updated 6 years ago
- ⚡ Open-source software for deep learning-based digital pathology☆138Updated last year
- Image filters for digital pathology: detect pen marks, background, and artifacts. Use them for preprocessing towards deep learning☆28Updated 5 years ago
- List of academic institutes/companies working on computer-based digital pathology image analysis☆43Updated 2 months ago
- Deep Convolutional Gaussian Mixture Model for Stain-Color Normalization in Histopathological H&E Images☆82Updated 4 years ago
- An open-source digital pathology based rapid image annotation tool☆86Updated 2 weeks ago
- Digital Pathology Whole Slide Image Analysis Toolbox☆51Updated 2 years ago
- This repository contains the implementation of TILAb-score as described in the original paper.☆18Updated 6 years ago
- Delete the label from a whole-slide image☆65Updated 4 years ago
- Use streaming to train whole-slides images with single image-level labels, by reducing GPU memory requirements with 99%.☆79Updated 2 years ago
- Unofficial implementation for ScanNet (a fast WSI prediction method) in PyTorch.☆21Updated 2 years ago
- Coincides with blogpost for using geojson and shapely☆33Updated 4 years ago
- A biologically interpretable integrative deep learning model that integrates PAthological images and GEnomic data☆18Updated 5 years ago
- HoVer-Net inference code for simultaneous nuclear segmentation and classification☆69Updated 2 years ago
- Re-stained whole slide image alignment☆35Updated 2 years ago