A tool for training machine-learning models with whole-slide imaging datasets
☆26Dec 27, 2023Updated 2 years ago
Alternatives and similar repositories for HistomicsML2
Users that are interested in HistomicsML2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An interactive machine learning framework for large histopathology images.☆21Dec 27, 2023Updated 2 years ago
- An open-source digital pathology based rapid image annotation tool☆91Jun 22, 2026Updated 3 weeks ago
- ☆19Jul 28, 2021Updated 4 years ago
- ☆21Jul 10, 2026Updated last week
- An optimized pipeline for working with Whole Slide Image (WSI) data in Tensorflow☆14Apr 30, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A Girder plugin for pathology image annotations and analysis.☆81Updated this week
- 🔬 Code-free deep segmentation for computational pathology☆58Jun 14, 2024Updated 2 years ago
- Re-stained whole slide image alignment☆36Oct 16, 2023Updated 2 years ago
- ⚡ Open-source software for deep learning-based digital pathology☆145Jun 14, 2024Updated 2 years ago
- Bayesian Inference of Slide-level Confidence via Uncertainty Index Thresholding☆30Sep 6, 2024Updated last year
- ☆23Dec 20, 2022Updated 3 years ago
- A set of codes to classify H&E slides using deep learning☆29Mar 9, 2022Updated 4 years ago
- Delete the label from a whole-slide image☆65Mar 18, 2021Updated 5 years ago
- Interactive Segmentation of Nucleus☆68Nov 22, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A Girder plugin for exposing slicer execution model's CLI modules over the web☆18Feb 26, 2026Updated 4 months ago
- Microscopy Image Browser version 2 is a package for image processing, segmentation and visualization of multi-dimensional (2D-4D) microsc…☆39Jul 2, 2026Updated 2 weeks ago
- NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation☆56Apr 4, 2022Updated 4 years ago
- MIA-DDTNet: A Dense Dual-Task Network for Tumor-infiltrating Lymphocyte Detection and Segmentation in Histopathological Images of Breast …☆14May 11, 2022Updated 4 years ago
- Data and code to accompany our Nature publication☆49May 3, 2022Updated 4 years ago
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆117Nov 8, 2025Updated 8 months ago
- Library for Digital Pathology Image Processing☆462Jul 13, 2026Updated last week
- Hands-on Sessions 1 and 2 at the Building Interpretable AI for Digital Pathology AMLD workshop 2021☆22Apr 28, 2021Updated 5 years ago
- A Python library of pre- and post-processing tools for applying deep learning to whole-slide images☆22Jan 16, 2023Updated 3 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Tool to create images and configuration files for Minerva-Story☆16Jun 1, 2026Updated last month
- ☆16Jan 18, 2023Updated 3 years ago
- Foundation Models for Biomedical Image Segmentation☆19Jun 3, 2025Updated last year
- A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in comput…☆272Dec 23, 2023Updated 2 years ago
- An open-source Python framework created for accelerating development of large image analysis workflows☆10Sep 9, 2022Updated 3 years ago
- ☆12Jan 18, 2023Updated 3 years ago
- Repository for the publication "Deep learning enables pathologist-like scoring of NASH models"☆17Sep 3, 2021Updated 4 years ago
- Pieces of code likely to be useful as part of larger projects☆21Feb 24, 2026Updated 4 months ago
- Quality control of whole-slide images through multi-class semantic segmentation of artifacts☆39Jan 25, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A tutorial demonstration of pathml on an example dataset for the manuscript "PathML: A unified framework for WSI analysis with deep learn…☆24Feb 8, 2022Updated 4 years ago
- Interpretable Analysis of Histological WSIs☆18Jan 30, 2026Updated 5 months ago
- A fullstack E-Commerce Admin panel created with NextJS, React, TailwindCSS, Clerk, shadcn and Prisma.☆13Jul 31, 2023Updated 2 years ago
- A Python library for deep learning on whole-slide images☆52Nov 5, 2021Updated 4 years ago
- Repository for DCIS segmentation pipeline☆11Nov 22, 2022Updated 3 years ago
- Amgad M, Salgado R, Cooper LA. A panoptic segmentation approach for tumor-infiltrating lymphocyte assessment: development of the MuTILs m…☆28Feb 6, 2026Updated 5 months ago
- HIPPO 🦛 is an explainable AI method and toolkit for weakly-supervised models in computational pathology. It enables hypothesis testing o…☆19Jan 15, 2025Updated last year