PathologyDataScience / HistomicsML2Links
A tool for training machine-learning models with whole-slide imaging datasets
☆24Updated last year
Alternatives and similar repositories for HistomicsML2
Users that are interested in HistomicsML2 are comparing it to the libraries listed below
Sorting:
- An open-source digital pathology based rapid image annotation tool☆77Updated 3 weeks ago
- 🔬 Code-free deep segmentation for computational pathology☆53Updated 11 months ago
- Delete the label from a whole-slide image☆64Updated 4 years ago
- Scripts for https://www.nature.com/articles/s41598-018-27707-4, using Convolutional Neural Network to detect lung cancer tumor area☆50Updated 4 years ago
- Coincides with blogpost for using geojson and shapely☆32Updated 4 years ago
- DLBCL-Morph dataset containing high resolution tissue microarray scans from 209 DLBCL cases, with geometric features computed using deep …☆36Updated 4 years ago
- Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay☆72Updated 4 months ago
- Quality control of whole-slide images through multi-class semantic segmentation of artifacts☆33Updated last year
- 🚀 H2G-Net: Segmentation of breast cancer region from whole slide images☆27Updated 6 months ago
- A Girder plugin for pathology image annotations and analysis.☆70Updated last week
- H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.☆54Updated last year
- List of academic institutes/companies working on computer-based digital pathology image analysis☆40Updated 3 months ago
- Full package for applying deep learning to virtual slides.☆68Updated 6 years ago
- Simple library for preprocessing histopathological whole-slide images (WSI) into tiles (a.k.a. patches) towards deep learning☆54Updated last year
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆102Updated 6 months ago
- ☆45Updated 2 years ago
- Re-stained whole slide image alignment☆33Updated last year
- Interactive Segmentation of Nucleus☆63Updated 2 years ago
- Interactive deep learning whole-cell segmentation and thresholding using partial annotations☆39Updated last week
- HistoClean is a tool for the preprocessing and augmentation of images used in deep learning models. This easy to use application brings…☆29Updated 3 years ago
- An optimized pipeline for working with Whole Slide Image (WSI) data in Tensorflow☆15Updated 4 years ago
- A Python library for deep learning on whole-slide images☆53Updated 3 years ago
- ☆21Updated 3 months ago
- Preprocessing module for large histological images☆20Updated last year
- Python wrapper library for PMA.start, a universal viewier for whole slide imaging and microscopy☆30Updated 5 months ago
- SlideRunner is a tool for massive cell annotations in whole slide images☆78Updated last year
- A set of codes to classify H&E slides using deep learning☆30Updated 3 years ago
- A tutorial demonstration of pathml on an example dataset for the manuscript "PathML: A unified framework for WSI analysis with deep learn…☆24Updated 3 years ago
- Handling whole-slide images with region-level annotations.☆10Updated 6 years ago
- Whole Slide Digital Pathology Image Tissue Localization☆44Updated last year