PathologyDataScience / HistomicsML2Links
A tool for training machine-learning models with whole-slide imaging datasets
☆26Updated 2 years ago
Alternatives and similar repositories for HistomicsML2
Users that are interested in HistomicsML2 are comparing it to the libraries listed below
Sorting:
- An open-source digital pathology based rapid image annotation tool☆90Updated last week
- 🔬 Code-free deep segmentation for computational pathology☆56Updated last year
- Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay☆76Updated last year
- Delete the label from a whole-slide image☆65Updated 4 years ago
- H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.☆57Updated 2 years ago
- Quality control of whole-slide images through multi-class semantic segmentation of artifacts☆38Updated 2 years ago
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆109Updated 2 months ago
- Use streaming to train whole-slides images with single image-level labels, by reducing GPU memory requirements with 99%.☆78Updated 3 years ago
- ⚡ Open-source software for deep learning-based digital pathology☆141Updated last year
- Topological Feature Extraction on Whole Slide Images using Graph Neural Networks.☆22Updated 5 years ago
- SlideRunner is a tool for massive cell annotations in whole slide images☆80Updated 6 months ago
- A tutorial demonstration of pathml on an example dataset for the manuscript "PathML: A unified framework for WSI analysis with deep learn…☆24Updated 3 years ago
- a toolbox for manipulation of digital pathology slides and annotations☆19Updated 5 years ago
- Full package for applying deep learning to virtual slides.☆72Updated 7 years ago
- A Girder plugin for pathology image annotations and analysis.☆78Updated 3 weeks ago
- Coincides with blogpost for using geojson and shapely☆33Updated 5 years ago
- Interactive Segmentation of Nucleus☆67Updated 3 years ago
- A Python library for deep learning on whole-slide images☆52Updated 4 years ago
- List of academic institutes/companies working on computer-based digital pathology image analysis☆45Updated 5 months ago
- HistoClean is a tool for the preprocessing and augmentation of images used in deep learning models. This easy to use application brings…☆32Updated 3 years ago
- Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering☆111Updated 2 years ago
- Pretrained model for self supervised histopathology☆122Updated 3 years ago
- HoVer-Net inference code for simultaneous nuclear segmentation and classification☆72Updated 3 years ago
- This repository provides scripts to reproduce the results in the paper "An annotation-free whole-slide training approach to pathological …☆64Updated 4 years ago
- Pipeline for computational pathology☆37Updated 2 years ago
- DLBCL-Morph dataset containing high resolution tissue microarray scans from 209 DLBCL cases, with geometric features computed using deep …☆39Updated 5 years ago
- Python 3 library for the augmentation & normalization of H&E images☆64Updated 3 years ago
- A pipeline to segment tissue from the background in histological images☆72Updated 2 years ago
- A biologically interpretable integrative deep learning model that integrates PAthological images and GEnomic data☆18Updated 5 years ago
- Simple library for preprocessing histopathological whole-slide images (WSI) into tiles (a.k.a. patches) towards deep learning☆56Updated 2 years ago