javadnoorb / HistCNN
A set of codes to classify H&E slides using deep learning
☆30Updated 3 years ago
Alternatives and similar repositories for HistCNN:
Users that are interested in HistCNN are comparing it to the libraries listed below
- Data and code to accompany our Nature publication☆45Updated 2 years ago
- machine-readable information for the TCGA dataset, mirrored from other sources☆20Updated 2 years ago
- This repository contains the implementation of TILAb-score as described in the original paper.☆18Updated 5 years ago
- A biologically interpretable integrative deep learning model that integrates PAthological images and GEnomic data☆18Updated 4 years ago
- ☆53Updated 3 years ago
- Code from Foersch et al. (Under Construction / Development)☆36Updated last year
- A Python package for handling histopathology whole-slide images using multiple instance learning (MIL) techniques.☆29Updated 11 months ago
- ECCV-AIMIA 2022 paper: "Multi-Scale Attention-based Multiple Instance Learning for Classification of Multi-Gigapixel Histology Images"☆12Updated 2 years ago
- ☆47Updated 2 years ago
- Topological Feature Extraction on Whole Slide Images using Graph Neural Networks.☆23Updated 4 years ago
- Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Qu…☆60Updated 2 months ago
- ☆19Updated 2 years ago
- ☆16Updated 2 years ago
- Sparse Convolutional Context-Aware Multiple Instance Learning for Whole Slide Image Classification | https://arxiv.org/abs/2105.02726☆25Updated 3 years ago
- ☆20Updated 3 years ago
- NuInsSeg: A Fully Annotated Dataset for Nuclei Instance Segmentation in H&E-Stained Histological Images☆33Updated 9 months ago
- [The Lancet Digital Health, MICCAI2020 Oral] The official code of "Spatially-aware Graph Neural Networks and Cross-level Molecular Profil…☆26Updated last year
- Pan-cancer computational histopathology reveals mutations, tumor composition and prognosis☆76Updated 4 years ago
- HCC_Deep_learning☆19Updated 4 years ago
- A tutorial demonstration of pathml on an example dataset for the manuscript "PathML: A unified framework for WSI analysis with deep learn…☆23Updated 3 years ago
- H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.☆54Updated last year
- First commit☆61Updated 2 years ago
- Histomic Prognostic Signature (HiPS): A population-level computational histologic signature for invasive breast cancer prognosis☆26Updated last year
- A pan-cancer platform for mutation prediction from routine histology☆68Updated 3 years ago
- ☆13Updated 2 months ago
- Deep learning enabled assessment of cardiac allograft rejection from endomyocardial biopsies- Nature Medicine☆31Updated 2 years ago
- Re-stained whole slide image alignment☆33Updated last year
- CEll spatial Organization-based graph convolutional network☆25Updated last year
- Scripts for data processing☆44Updated 10 months ago
- ☆15Updated last year