mahmoodlab / SISHLinks
Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering
☆108Updated 2 years ago
Alternatives and similar repositories for SISH
Users that are interested in SISH are comparing it to the libraries listed below
Sorting:
- Use streaming to train whole-slides images with single image-level labels, by reducing GPU memory requirements with 99%.☆78Updated 2 years ago
- Official code for "Self-Supervised driven Consistency Training for Annotation Efficient Histopathology Image Analysis" Published in Medic…☆60Updated 3 years ago
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆107Updated last month
- H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.☆57Updated 2 years ago
- A pipeline to segment tissue from the background in histological images☆71Updated 2 years ago
- Python 3 library for the augmentation & normalization of H&E images☆62Updated 3 years ago
- Histopathology Slides Preprocessing Pipeline☆42Updated last week
- NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation☆55Updated 3 years ago
- Histopathology Image Analysis☆92Updated 2 years ago
- A tutorial demonstration of pathml on an example dataset for the manuscript "PathML: A unified framework for WSI analysis with deep learn…☆24Updated 3 years ago
- HoVer-Net inference code for simultaneous nuclear segmentation and classification☆70Updated 3 years ago
- Pretrained model for self supervised histopathology☆121Updated 3 years ago
- ☆46Updated 2 years ago
- AI-based pathology predicts origins for cancers of unknown primary - Nature☆177Updated 4 years ago
- ☆66Updated last year
- Official repository of Benchmarking Self-Supervised Learning on Diverse Pathology Datasets☆91Updated 2 years ago
- ☆57Updated 3 years ago
- Analysis of 3D pathology samples using weakly supervised AI - Cell☆110Updated 11 months ago
- This repository provides scripts to reproduce the results in the paper "An annotation-free whole-slide training approach to pathological …☆64Updated 4 years ago
- ZoomMIL is a multiple instance learning (MIL) method that learns to perform multi-level zooming for efficient Whole-Slide Image (WSI) cla…☆68Updated 3 years ago
- Inference code for HoVer-NeXt☆42Updated 2 months ago
- A Python library for deep learning on whole-slide images☆53Updated 4 years ago
- Simple library for preprocessing histopathological whole-slide images (WSI) into tiles (a.k.a. patches) towards deep learning☆56Updated 2 years ago
- ☆37Updated 2 years ago
- Code from Foersch et al. (Under Construction / Development)☆38Updated 2 years ago
- Deep Learning-based Frozen Section to FFPE Translation☆65Updated last year
- ☆46Updated 3 years ago
- Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay☆74Updated 11 months ago
- Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024☆142Updated 4 years ago
- Deep learning enabled assessment of cardiac allograft rejection from endomyocardial biopsies- Nature Medicine☆33Updated 3 years ago