mahmoodlab / SISHLinks
Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering
☆107Updated 2 years ago
Alternatives and similar repositories for SISH
Users that are interested in SISH are comparing it to the libraries listed below
Sorting:
- Pretrained model for self supervised histopathology☆120Updated 3 years ago
- Use streaming to train whole-slides images with single image-level labels, by reducing GPU memory requirements with 99%.☆79Updated 2 years ago
- Histopathology Image Analysis☆92Updated 2 years ago
- Histopathology Slides Preprocessing Pipeline☆40Updated 4 months ago
- Official code for "Self-Supervised driven Consistency Training for Annotation Efficient Histopathology Image Analysis" Published in Medic…☆62Updated 3 years ago
- Self-Supervised Vision Transformers Learn Visual Concepts in Histopathology (LMRL Workshop, NeurIPS 2021)☆140Updated 3 years ago
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆104Updated 7 months ago
- NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation☆54Updated 3 years ago
- Analysis of 3D pathology samples using weakly supervised AI - Cell☆102Updated 5 months ago
- Official repository of Benchmarking Self-Supervised Learning on Diverse Pathology Datasets☆88Updated 2 years ago
- A tutorial demonstration of pathml on an example dataset for the manuscript "PathML: A unified framework for WSI analysis with deep learn…☆24Updated 3 years ago
- A pipeline to segment tissue from the background in histological images☆69Updated 2 years ago
- ☆45Updated 2 years ago
- Python 3 library for the augmentation & normalization of H&E images☆57Updated 2 years ago
- AI-based pathology predicts origins for cancers of unknown primary - Nature☆174Updated 3 years ago
- HoVer-Net inference code for simultaneous nuclear segmentation and classification☆68Updated 2 years ago
- H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.☆55Updated 2 years ago
- Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay☆72Updated 6 months ago
- ZoomMIL is a multiple instance learning (MIL) method that learns to perform multi-level zooming for efficient Whole-Slide Image (WSI) cla…☆66Updated 2 years ago
- Training/Evaluation code for HoVer-NeXt☆14Updated 6 months ago
- Benchmarking toolkit for patch-based histopathology image classification.☆41Updated 2 years ago
- DLBCL-Morph dataset containing high resolution tissue microarray scans from 209 DLBCL cases, with geometric features computed using deep …☆36Updated 4 years ago
- A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in comput…☆256Updated last year
- ☆40Updated 3 years ago
- This repository provides scripts to reproduce the results in the paper "An annotation-free whole-slide training approach to pathological …☆63Updated 3 years ago
- Stain normalization tools for histological analysis and computational pathology☆147Updated 6 months ago
- Deep learning enabled assessment of cardiac allograft rejection from endomyocardial biopsies- Nature Medicine☆31Updated 3 years ago
- Re-stained whole slide image alignment☆33Updated last year
- Topological Feature Extraction on Whole Slide Images using Graph Neural Networks.☆23Updated 4 years ago
- Quality control of whole-slide images through multi-class semantic segmentation of artifacts☆34Updated last year