Alternatives and similar repositories for NA-MPNN

Users that are interested in NA-MPNN are comparing it to the libraries listed below

• VarunUllanat / mint
  Learning the language of protein-protein interactions
  ☆120Updated last week
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆77Updated 2 months ago
• liuyf020419 / SCUBA-D
  ☆61Updated last year
• jafetgado / EpHod
  Machine learning prediction of enzyme optimum pH
  ☆23Updated 8 months ago
• ievapudz / TemStaPro
  TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.
  ☆70Updated last year
• SLx64 / af3cli
  A command-line interface and Python library for generating AlphaFold3 input files.
  ☆38Updated 2 weeks ago
• danny305 / StabilityOracle
  ☆29Updated 3 months ago
• uci-cbcl / esm-efficient
  Efficient implementatin of ESM family.
  ☆78Updated 4 months ago
• flyark / AFM-LIS
  Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)…
  ☆63Updated 2 months ago
• Jfeldman34 / AF3Complex
  ☆53Updated 6 months ago
• ai4protein / VenusPLM
  Versatile Embedding Network for Understanding protein Sequences
  ☆25Updated 8 months ago
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆55Updated 5 months ago
• AspirinCode / AlphaPPImd
  Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks
  ☆32Updated last year
• patrickbryant1 / AFProfile
  Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
  ☆70Updated last year
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆69Updated 6 months ago
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆52Updated 3 months ago
• jwohlwend / minifold
  MiniFold: Simple, Fast and Accurate Protein Structure Prediction
  ☆82Updated 6 months ago
• samuelmurail / af_analysis
  Analysis of alphafold and colabfold results
  ☆32Updated 3 weeks ago
• steineggerlab / folddisco
  Fast indexing and search of discontinuous motifs in protein structures
  ☆111Updated 2 weeks ago
• psipred / Merizo
  Fast and accurate protein domain segmentation using Invariant Point Attention
  ☆44Updated 7 months ago
• PapenfussLab / proteindj
  Official repository for the ProteinDJ protein design pipeline
  ☆81Updated 2 weeks ago
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆68Updated 4 months ago
• KULL-Centre / _2024_cagiada_stability
  ☆72Updated 10 months ago
• seanrjohnson / protein_scoring
  Generating and scoring novel enzyme sequences with a variety of models and metrics
  ☆72Updated last month
• jonfunk21 / ProteusAI
  ProteusAI is a library for the machine learning driven engineering of proteins. The library enables workflows from protein structure pred…
  ☆66Updated 4 months ago
• CongLabCode / RoseTTAFold2-PPI
  Fast deep learning methods for large-scale protein-protein interaction screening
  ☆114Updated 5 months ago
• Model3DBio / AlphaFold3-Conda-Install
  Step-by-step guide to install and configure AlphaFold 3 using a Conda Python 3.11 environment. No system-wide installations required. ✅ …
  ☆37Updated 3 weeks ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆60Updated 8 months ago
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆88Updated last month
• jaredsagendorf / pnabind
  A python package and collection of scripts for computing protein surface meshes, chemical, electrostatic, geometric features, and buildin…
  ☆27Updated 6 months ago