☆58Nov 7, 2025Updated 4 months ago
Alternatives and similar repositories for NA-MPNN
Users that are interested in NA-MPNN are comparing it to the libraries listed below
Sorting:
- ☆12Feb 7, 2023Updated 3 years ago
- ☆15Mar 28, 2025Updated 11 months ago
- Expert-Guided Protein Language Models enable Accurate and Blazingly Fast Fitness Prediction☆17Feb 6, 2026Updated last month
- ProteinChat: A frontier protein-language generative model designed to decode the molecular language of proteins.☆64Mar 7, 2025Updated last year
- Graphormer Based Protein Sequence Design☆26Feb 2, 2024Updated 2 years ago
- ☆25Oct 8, 2024Updated last year
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆63Feb 12, 2026Updated 3 weeks ago
- ☆61Apr 9, 2024Updated last year
- A python package and collection of scripts for computing protein surface meshes, chemical, electrostatic, geometric features, and buildin…☆27Jul 15, 2025Updated 7 months ago
- ☆31Dec 12, 2024Updated last year
- Code release for "Improving diffusion-based protein backbone generation with global-geometry-aware latent encoding"☆47Aug 5, 2025Updated 7 months ago
- ☆32Feb 5, 2025Updated last year
- Making Protein Language Modeling Accessible to All Biologists☆156Updated this week
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆38Jul 25, 2024Updated last year
- Code for designing biased protein states☆62Feb 13, 2026Updated 3 weeks ago
- Benchmarking of 1D pattern classification networks☆10Jul 19, 2023Updated 2 years ago
- Home of the public Martini 3 lipid parameters☆19Sep 29, 2025Updated 5 months ago
- ☆12Mar 28, 2025Updated 11 months ago
- ProtMamba: a homology-aware but alignment-free protein state space model☆82Jun 3, 2025Updated 9 months ago
- Public Release of ProGen3 family of Models☆100Jul 21, 2025Updated 7 months ago
- Graphical Representation of Ancestral Sequence Predictions☆12Mar 6, 2023Updated 3 years ago
- ☆23Dec 5, 2025Updated 3 months ago
- Knowledge graph enhanced LLM for binding affinity prediction☆14Aug 20, 2024Updated last year
- A python implementation of pdb2oniom for QM/MM (ONIOM) calculations☆10Oct 2, 2025Updated 5 months ago
- Enhancer-promoter interaction model☆10Nov 28, 2022Updated 3 years ago
- ☆43Jan 10, 2024Updated 2 years ago
- ProTrek: illuminating the Protein Universe through Trimodal Protein Language Model☆193Feb 14, 2026Updated 3 weeks ago
- VenusFSFP: Few-Shot Protein Fitness Prediction☆107Nov 18, 2025Updated 3 months ago
- ☆42Aug 29, 2025Updated 6 months ago
- Fast and accurate protein domain segmentation using Invariant Point Attention☆45May 22, 2025Updated 9 months ago
- ☆41Oct 1, 2023Updated 2 years ago
- Protein structure diffusion model for unconditional protein generation and motif scaffolding☆188Jun 24, 2024Updated last year
- Markov State Models on the Muller potential: a MSMBuilder Tutorial☆12Mar 18, 2013Updated 12 years ago
- SpotMAX: a generalist framework for multi-dimensional automatic spot detection and quantification☆14Jan 14, 2026Updated last month
- Nature Computational Science: RhoDesign is a structure-to-sequence model for RNA design.☆55Nov 8, 2024Updated last year
- Deep learning + physical modeling for 3D protein metal ion binding prediction☆13Feb 24, 2025Updated last year
- SableBind is an open-source framework dedicated to predicting protein-ligand binding affinity☆13Feb 6, 2025Updated last year
- ☆10Apr 1, 2024Updated last year
- p-IgGen: A Generative Paired Antibody Language Model☆13May 6, 2025Updated 10 months ago