jaredsagendorf / pnabindLinks
A python package and collection of scripts for computing protein surface meshes, chemical, electrostatic, geometric features, and building/training graph neural network models of protein-nucleic acid binding
☆25Updated 3 weeks ago
Alternatives and similar repositories for pnabind
Users that are interested in pnabind are comparing it to the libraries listed below
Sorting:
- Fast and accurate protein domain segmentation using Invariant Point Attention☆40Updated 2 months ago
- ☆28Updated 6 months ago
- ☆70Updated 4 months ago
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆39Updated last year
- Code for humanization of antibody and nanobody☆49Updated 8 months ago
- ML-optimized library design with improved fitness and diversity for protein engineering☆35Updated last year
- ☆44Updated 10 months ago
- Extension of ThermoMPNN for double mutant predictions☆41Updated this week
- Machine learning prediction of enzyme optimum pH☆44Updated 3 months ago
- A command-line interface and Python library for generating AlphaFold3 input files.☆35Updated 2 months ago
- ☆27Updated last year
- ☆38Updated 10 months ago
- ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.☆33Updated 2 weeks ago
- Active Learning-Assisted Directed Evolution for Protein Engineering☆63Updated 8 months ago
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆31Updated last year
- ☆60Updated last year
- Efficient manipulation of protein structures in Python☆55Updated 9 months ago
- Machine learning prediction of enzyme optimum pH☆16Updated 3 months ago
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆63Updated last month
- This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.☆15Updated 2 years ago
- Kuhlman Lab Installation of AlphaFold3☆29Updated 3 months ago
- ☆20Updated last year
- Metrics for our protein design competitions.☆35Updated 9 months ago
- TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.☆60Updated last year
- Making Protein folding accessible to all!☆22Updated last year
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆68Updated 11 months ago
- A tool for 2D protein visualization aimed at improving the comparability of protein structures through standardized 2D visualizations.☆16Updated last week
- ☆26Updated 2 weeks ago
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆44Updated 8 months ago
- A Unified Approach to Protein Engineering☆42Updated last year