jaredsagendorf / pnabind
A python package and collection of scripts for computing protein surface meshes, chemical, electrostatic, geometric features, and building/training graph neural network models of protein-nucleic acid binding
☆24Updated 3 weeks ago
Alternatives and similar repositories for pnabind:
Users that are interested in pnabind are comparing it to the libraries listed below
- ☆26Updated last month
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆44Updated 3 months ago
- The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…☆25Updated 8 months ago
- ML-optimized library design with improved fitness and diversity for protein engineering☆30Updated 8 months ago
- Kuhlman Lab Installation of AlphaFold3☆23Updated last week
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆28Updated 9 months ago
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆38Updated 4 months ago
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆22Updated 8 months ago
- This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.☆15Updated last year
- ☆24Updated 9 months ago
- ☆64Updated 2 weeks ago
- Fast deep learning methods for large-scale protein-protein interaction screening☆36Updated 6 months ago
- Modelling protein conformational landscape with Alphafold☆46Updated 3 weeks ago
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆26Updated last year
- ☆58Updated 11 months ago
- Efficient manipulation of protein structures in Python☆52Updated 4 months ago
- Fast and accurate protein domain segmentation using Invariant Point Attention☆34Updated 4 months ago
- ☆23Updated last year
- Active Learning-Assisted Directed Evolution for Protein Engineering☆45Updated 4 months ago
- ☆43Updated 6 months ago
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆32Updated 4 months ago
- PyDock Tutorial☆30Updated 6 years ago
- ☆33Updated 6 months ago
- Machine learning prediction of enzyme optimum pH☆29Updated 3 weeks ago
- ☆27Updated 2 years ago
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆54Updated last month
- Homomer symmetry prediction from protein sequence☆20Updated 3 weeks ago
- Official open-source of Accurate structure prediction of immune proteins using parameter-efficient transfer learning☆21Updated 2 weeks ago
- Making Protein folding accessible to all!☆22Updated last year
- ☆26Updated 7 months ago