Martini-Force-Field-Initiative / M3-Lipid-ParametersView external linksLinks
Home of the public Martini 3 lipid parameters
☆18Sep 29, 2025Updated 4 months ago
Alternatives and similar repositories for M3-Lipid-Parameters
Users that are interested in M3-Lipid-Parameters are comparing it to the libraries listed below
Sorting:
- Home of the Martini 3 Sterol Parameters☆13Oct 10, 2023Updated 2 years ago
- Set of tools to generate a multi-eGO force field to perform molecular dynamics simulations☆14Jan 30, 2026Updated 2 weeks ago
- Martini 3 Building Blocks for Lipid Nanoparticle Design☆21Feb 4, 2026Updated last week
- A tool for visualizing Martini force field simulations in VMD☆22Aug 22, 2025Updated 5 months ago
- Collective variables by artificial neural networks☆10Mar 16, 2022Updated 3 years ago
- Advanced tutorials for WESTPA 2.0☆15Oct 20, 2025Updated 3 months ago
- COBY (Coarse Grained System Builder) can be used to create coarse-grained systems in Martini 3☆43Nov 25, 2025Updated 2 months ago
- An extension to the MDAnalysis library providing support for dealing with structural ensembles. There is currently support for calculatin…☆16Jul 20, 2018Updated 7 years ago
- Protein prediction models implemented with Modal☆30Jan 25, 2026Updated 3 weeks ago
- lindemann is a python package to calculate the Lindemann index of a lammps trajectory☆24Jun 11, 2024Updated last year
- ☆29May 31, 2023Updated 2 years ago
- Fast protein domain structure embedding+search tool☆27Sep 21, 2025Updated 4 months ago
- a high-throughput alchemical free energy execution system for use with HPC, cloud, bare metal, and Folding@Home☆33Feb 4, 2026Updated last week
- A simple implementation of replica exchange MD simulations for OpenMM.☆24Jul 19, 2021Updated 4 years ago
- Force Fields☆68Jan 27, 2025Updated last year
- ☆62Dec 10, 2025Updated 2 months ago
- Source code and examples for AlphaFold Unmasked☆76Nov 25, 2025Updated 2 months ago
- PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.☆32Jan 17, 2023Updated 3 years ago
- Features Based Conformational Clustering of MD trajectories. See details at:☆10Nov 20, 2025Updated 2 months ago
- A high performance drop-in replacement for Biotite's PDBFile.☆41May 27, 2025Updated 8 months ago
- Code for designing biased protein states☆59Nov 20, 2025Updated 2 months ago
- OpenMM plugin that implements (an)isotropic polarizable point dipoles and multipoles up to octopoles.☆11Feb 7, 2025Updated last year
- ☆44Sep 5, 2024Updated last year
- Code and software used to design de novo protein nanomachines. Supplementary material for "Computational design of nanoscale rotational m…☆10Mar 19, 2022Updated 3 years ago
- What exactly are the non-canonical amino acids in the Rosetta database folder?☆12Feb 16, 2020Updated 5 years ago
- How to start with Jupyter, Python, Libs, Github and Models☆13May 18, 2022Updated 3 years ago
- ☆11Apr 18, 2024Updated last year
- Accelerated molecular crystal structure determination from powder diffraction data☆13Jun 20, 2025Updated 7 months ago
- Screen interactions with AlphaFold Multimer☆13Mar 10, 2025Updated 11 months ago
- ProQDock is a Protein-Protein docking scoring program that uses high level coordinate driven features compiled and trained by a Support V…☆11Dec 11, 2021Updated 4 years ago
- Repositorio de la unidad 2 del curso INFO274: Simulación, Instituto de Informática, UACh☆10Dec 18, 2022Updated 3 years ago
- Reweighted Autoencoded Variational Bayes for Enhanced Sampling (RAVE)☆45May 3, 2020Updated 5 years ago
- Adding hydrogens to molecular models☆55Nov 24, 2025Updated 2 months ago
- Fast and accurate protein domain segmentation using Invariant Point Attention☆46May 22, 2025Updated 8 months ago
- Highly informative TCR representation model☆15Nov 26, 2025Updated 2 months ago
- The Expanded Package for IET Solvation☆13Feb 6, 2025Updated last year
- Binding Affinity Prediction using Deep learning models☆12Jun 9, 2021Updated 4 years ago
- A package for multi-dimensional integration using monte carlo methods☆40Feb 17, 2024Updated last year
- SableBind is an open-source framework dedicated to predicting protein-ligand binding affinity☆13Feb 6, 2025Updated last year