SchmollerLab / SpotMAXLinks
SpotMAX: a generalist framework for multi-dimensional automatic spot detection and quantification
☆13Updated this week
Alternatives and similar repositories for SpotMAX
Users that are interested in SpotMAX are comparing it to the libraries listed below
Sorting:
- Website for the BioImage Model zoo -- a model zoo for bioimage analysis.☆60Updated 3 months ago
- An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.☆77Updated 2 months ago
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆81Updated 3 weeks ago
- StarDist plugin for napari☆39Updated last year
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆180Updated last week
- ☆51Updated 5 months ago
- Transformer-based cell tracking for live-cell microscopy☆95Updated this week
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆148Updated last week
- Open source Python library for building bioimage analysis pipelines☆182Updated this week
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆135Updated 5 years ago
- ☆85Updated 6 months ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆103Updated last week
- A python algorithm for tracking cells in 3D time lapse images.☆64Updated 3 weeks ago
- Accurate and efficient spot detection for microscopy data☆101Updated last week
- A platform for compiling, analyzing, and exploring tracking data☆47Updated last month
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆150Updated last month
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆86Updated 3 weeks ago
- A napari plugin for clustering objects according to their properties.☆88Updated this week
- An introduction to bioimage analysis - http://bioimagebook.github.io☆73Updated last month
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆56Updated 11 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆29Updated 5 months ago
- ImageJ macros to run Cellpose from Fiji (using the plugin from BIOP-EPFL) and to match nuclei and cell body label maps.☆17Updated 6 months ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆68Updated last year
- ImageJ plugins to run ilastik workflows☆25Updated last month
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆168Updated 4 months ago
- "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…☆15Updated 2 years ago
- Lectures for a napari training course☆51Updated 2 years ago
- Python scripts library for Aivia. Ask your questions on the forum >>☆15Updated 2 weeks ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆38Updated 4 months ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆84Updated 2 weeks ago