Markov State Models on the Muller potential: a MSMBuilder Tutorial
☆12Mar 18, 2013Updated 13 years ago
Alternatives and similar repositories for mullermsm
Users that are interested in mullermsm are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tutorials of few enhanced sampling methods along with bash script to run the method in a single shot..☆49Feb 11, 2021Updated 5 years ago
- ☆13Jul 24, 2025Updated last year
- A fully featured ASE calculator for xTB☆25Oct 21, 2024Updated last year
- ☆25Feb 28, 2023Updated 3 years ago
- Simple Molecular Dynamics code for Discovery-Driven approach to real gas properties.☆27Aug 23, 2022Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- [ICML 2025] Repurposing pre-trained score-based generative models for transition path sampling by minimizing the Onsager-Machlup (OM) act…☆29Mar 20, 2026Updated 4 months ago
- ☆10Sep 16, 2020Updated 5 years ago
- a python package for reduced density matrix techniques☆16Sep 4, 2020Updated 5 years ago
- Two algorithms to fragment molecules into specified molecular subunits (e.g. functional groups)☆35Feb 15, 2022Updated 4 years ago
- ☆13Mar 25, 2026Updated 4 months ago
- Internal Coordinate Analysis of Vibrational Modes from QM Calculations.☆30Jul 12, 2026Updated last month
- ☆12Jul 3, 2021Updated 5 years ago
- A library to align rigid molecules and clusters☆13Aug 8, 2026Updated last week
- WEAS is JavaScript library to visualize and manipulate the atomic structures directly in the web browser.☆15Jul 31, 2026Updated 2 weeks ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A wrapper to run xtb inside Gaussian.☆30Aug 18, 2020Updated 5 years ago
- Python client for TeraChem Cloud☆13Jul 16, 2026Updated last month
- Re-scoring a set of docked ligands with off-the-shelf algorithms to assess utility in virtual screening☆11Oct 13, 2021Updated 4 years ago
- Lennard Jones Molecular Dynamics in C++☆14Jun 17, 2016Updated 10 years ago
- Some C++ code for basic Molecular Dynamics simulations.☆12Sep 12, 2018Updated 7 years ago
- PINY cleanup and new feature integration.☆14Dec 9, 2016Updated 9 years ago
- Welcome to the Vite Shadcn Boilerplate! This repository serves as a comprehensive starter template for rapidly setting up a Vite project …☆19Feb 1, 2024Updated 2 years ago
- ☆12Aug 27, 2020Updated 5 years ago
- SubPEx (Sub-Pocket Explorer) is a tool to enhance ensemble (multiple-receptor/relaxed-complex) virtual screening. It uses weighted ensemb…☆18Jun 30, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Clustering tool for biomolecular structural ensembles and data in general.☆10Aug 24, 2020Updated 5 years ago
- A python implementation of pdb2oniom for QM/MM (ONIOM) calculations☆12Oct 2, 2025Updated 10 months ago
- ☆10Feb 18, 2020Updated 6 years ago
- Scripts for calculating RESP charges with Gaussian, starting only with .xyz file of your compound. Generate .mol2, .frcmod and .pdb with …☆10Mar 26, 2019Updated 7 years ago
- Code examples and demos for AIPI 520: Modeling Process and Algorithms☆13Sep 24, 2025Updated 10 months ago
- Helper function for Markov State Models☆11Jun 25, 2024Updated 2 years ago
- A Python 3 script for cleaning up the PDB file☆11Dec 20, 2017Updated 8 years ago
- ☆12Apr 21, 2026Updated 3 months ago
- Multi-Level DBSCAN: A Hierarchical Density-Based Clustering Method for Analyzing Molecular Dynamics Trajectories☆13Dec 6, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆13Jul 22, 2025Updated last year
- A Python3 script for removal of outlier sequences from a multiple sequence alignment (FASTA format).☆10Jul 6, 2026Updated last month
- Comparison of principal components analysis with diffusion maps on toy data sets and a molecular simulation trajectory☆17Feb 1, 2017Updated 9 years ago
- This toolbox offers 8 machine learning methods including KNN, SVM, DA, DT, and etc., which are simpler and easy to implement.☆24Jan 10, 2021Updated 5 years ago
- Method for constructing embeddings of GO terms.☆14Nov 25, 2021Updated 4 years ago
- Codata constants for Fortran, C and Python.☆10Updated this week
- A toolkit to bulk-submission, download, analysis and summarizing data from abYsis.org☆10Apr 20, 2020Updated 6 years ago