Enhancer-promoter interaction model
☆10Nov 28, 2022Updated 3 years ago
Alternatives and similar repositories for TransEPI
Users that are interested in TransEPI are comparing it to the libraries listed below
Sorting:
- Tool for generation and visualization of 4D trajectories (latitude, longitude, altitude, speed) between any two airports in the world.☆14Aug 30, 2025Updated 6 months ago
- ☆84Feb 3, 2021Updated 5 years ago
- Reanalysis of the repressive capacity of promoter DNA methylation☆11Feb 14, 2019Updated 7 years ago
- Command line and webapp for retrosynthetic disconnections, molecular complexity and synthetic accessibility metrics☆18Aug 14, 2024Updated last year
- Transposable element expression at unique loci in single cells with CELLO-seq☆11Jun 17, 2024Updated last year
- Modeling Enhancer-Promoter Interactions with Attention-Based Neural Networks☆10Feb 13, 2018Updated 8 years ago
- source for paper DGNN-DDI☆11Oct 8, 2023Updated 2 years ago
- Plotting average TAD heatmap for Hi-C data (give TAD segmentation and cool/hiclib interactions map).☆10Jun 5, 2021Updated 4 years ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Jan 18, 2021Updated 5 years ago
- GeneBac: a modular framework for predicting antibiotic resistance from DNA sequence.☆16Jan 3, 2024Updated 2 years ago
- ☆13Nov 19, 2021Updated 4 years ago
- pipelines to process scRNA-seq data☆12Jan 11, 2021Updated 5 years ago
- Code and analysis pipeline for NASC-seq.☆11Jun 14, 2022Updated 3 years ago
- ☆15Aug 13, 2023Updated 2 years ago
- ☆13Sep 30, 2023Updated 2 years ago
- Code for ICML 2021 paper "Regularizing towards Causal Invariance: Linear Models with Proxies" (ICML 2021)☆11Mar 14, 2022Updated 3 years ago
- Toolbox for the processing and analysis of MALDI-MSI data☆14Sep 10, 2025Updated 5 months ago
- Multivariate Time Series Imputation with Generative Adversarial Networks☆11Jan 8, 2021Updated 5 years ago
- ☆18Jan 11, 2026Updated last month
- Implementation of the AIControl paper in Julia 1.0☆17Mar 4, 2019Updated 6 years ago
- [MM 2023] Toward High Quality Facial Representation Learning☆19Oct 30, 2023Updated 2 years ago
- Enformer Celltyping is a tensorflow, multi-headed attention based model that incorporates distal effects of Deoxyribonucleic Acid (DNA) i…☆16Jun 25, 2025Updated 8 months ago
- ☆12Feb 7, 2023Updated 3 years ago
- Counterfactual Generative Modeling with Variational Causal Inference (ICLR 2025)☆20Sep 30, 2025Updated 5 months ago
- 7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs☆13Oct 15, 2025Updated 4 months ago
- [DEPRECATED | MIGRATED TO IQPS] Crowd-source question papers from students and put them up on MFQP!☆11Apr 18, 2024Updated last year
- A machine-learning algorithm to predict CTCF-mediated long-range chromatin interactions☆17Nov 7, 2018Updated 7 years ago
- Single-sequence protein-RNA complex structure prediction with biological language models☆15Sep 23, 2025Updated 5 months ago
- Predicting Nanobody Binding Epitopes Based on a Pretrained RoBERTa-based Model☆15Jun 4, 2024Updated last year
- [BIB 2023] Official implementation of "R2-DDI: Relation-aware Feature Refinement for Drug-drug Interaction Prediction".☆13Mar 18, 2024Updated last year
- A quick recap of widely used differential analyses methods in R for RNA-seq experiments☆16Dec 7, 2024Updated last year
- protein backbone refinement☆15Sep 12, 2024Updated last year
- ☆58Nov 7, 2025Updated 3 months ago
- ☆14Jun 24, 2017Updated 8 years ago
- A Python implementation of the original DI domain caller☆12Aug 2, 2020Updated 5 years ago
- Benchmark of robust self-supervised learning (RobustSSL) methods & Code for AutoLoRa (ICLR 2024).☆19Dec 10, 2025Updated 2 months ago
- A curated list of papers on graph transfer learning (GTL).☆18Oct 23, 2023Updated 2 years ago
- High-performance stochastic modeling of DNA loop extrusion interactions☆18Dec 22, 2025Updated 2 months ago
- Fast, gene-specific joint humanisation of antibody heavy and light chains.☆18Nov 11, 2025Updated 3 months ago