wtmatlock / flankerLinks
Gene-flank analysis tool
☆27Updated 6 months ago
Alternatives and similar repositories for flanker
Users that are interested in flanker are comparing it to the libraries listed below
Sorting:
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆22Updated 3 years ago
- Bacterial GWAS analysis☆40Updated 3 weeks ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆59Updated last week
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago
- Recombination-free trees☆58Updated 3 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated 2 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆31Updated 4 months ago
- whole genome MLST analysis☆43Updated last week
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- IslandPath standalone software☆32Updated last year
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- Discover and annotate the virome☆43Updated 2 months ago
- Identify phage regions in bacterial genomes for masking purposes☆32Updated 5 years ago
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆17Updated 11 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆51Updated 2 months ago
- Predict plasmids from uncorrected long read data☆40Updated 5 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆49Updated 2 years ago
- Strain Resolution ON Graphs☆48Updated last year
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 2 years ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Updated 2 years ago
- Calculate assocations between genes and traits☆23Updated 3 months ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆38Updated 8 months ago
- Split Kmer Analysis☆65Updated 3 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆44Updated 4 years ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆25Updated 2 months ago
- GTDB taxonomy taxdump files with trackable TaxIds☆54Updated last month
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆28Updated 8 months ago