Gene-flank analysis tool
☆37Dec 18, 2024Updated last year
Alternatives and similar repositories for flanker
Users that are interested in flanker are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆22Sep 9, 2026Updated last month
- Library of sketching functions used by PopPUNK☆29Jun 8, 2026Updated 4 months ago
- Interpretative standards for AMR genotypes☆32Oct 8, 2026Updated 3 weeks ago
- The gview wiki migrated to GitHub.☆12Sep 3, 2020Updated 6 years ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆12Mar 29, 2025Updated last year
- A tool for the identification of coincident (associating and dissociating) genes in pangenomes.☆112Oct 20, 2023Updated 3 years ago
- lsaBGC - suite for pan-BGC-omics analysis☆23Nov 21, 2025Updated 11 months ago
- A tool to detect acquired AMR genes directly from long read sequencing data.☆32Jan 31, 2026Updated 9 months ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Jun 17, 2022Updated 4 years ago
- Analysing the genomic context of mobile genes☆11Jul 21, 2025Updated last year
- ☆10Jun 9, 2020Updated 6 years ago
- ☆44Nov 20, 2021Updated 4 years ago
- ☆16Jun 21, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.☆129Oct 22, 2026Updated last week
- ONT-first assembly pipeline☆13Jul 15, 2025Updated last year
- MetagenOmic read Re-Assigner and abundance quantifier☆22Jun 24, 2026Updated 4 months ago
- Bioinformatics tool to find integrons in bacterial genomes☆95May 7, 2025Updated last year
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆27Sep 12, 2024Updated 2 years ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆103Updated this week
- A taxonomic classifier of plasmids☆32Jul 7, 2021Updated 5 years ago
- StrainEst - abundance estimation of strains☆19Jan 17, 2020Updated 6 years ago
- This is the webpage of the ESGEM-AMR Working Group☆16Oct 23, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆692Oct 11, 2026Updated 3 weeks ago
- Simple-to-use interactive comparison of two bacterial genomes☆28Jan 30, 2026Updated 9 months ago
- Follow up to Grace Blackwell's 661k dataset, for 2023☆157Jun 10, 2026Updated 4 months ago
- Plasmid analysis using rearrangement distances☆56Jul 19, 2026Updated 3 months ago
- A small, auxiliary index to massively improve parallel fastq parsing☆32Mar 6, 2026Updated 7 months ago
- 雷 - kaminari (thunder/lightning)☆12May 4, 2026Updated 5 months ago
- ☆40Oct 12, 2026Updated 3 weeks ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆157Dec 31, 2025Updated 10 months ago
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆114Oct 12, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆66Sep 1, 2026Updated 2 months ago
- sunburst plots for taxonomy - working to update Krona☆48Sep 22, 2025Updated last year
- A high-resolution long-read metagenome assembler for even noisy reads. Myloasm assembles strain-resolved, circular + complete genomes fro…☆176Oct 11, 2026Updated 3 weeks ago
- BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS data☆10Jun 13, 2023Updated 3 years ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆67Jun 16, 2025Updated last year
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Aug 8, 2022Updated 4 years ago
- Bacterial Annotation by Learned Representation of Genes☆62Mar 26, 2026Updated 7 months ago