wtmatlock / flankerLinks
Gene-flank analysis tool
☆33Updated 10 months ago
Alternatives and similar repositories for flanker
Users that are interested in flanker are comparing it to the libraries listed below
Sorting:
- Recombination-free trees☆60Updated 2 months ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Updated 3 years ago
- A tool for removing redundant genomes from a set of assemblies☆77Updated last month
- Discover and annotate the virome☆53Updated 2 weeks ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- Split Kmer Analysis☆65Updated 3 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- Bacterial GWAS analysis☆45Updated this week
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆64Updated 4 months ago
- Calculate assocations between genes and traits☆28Updated 7 months ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- A toolkit for prokaryotic comparative genomics☆51Updated 2 weeks ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆31Updated 3 months ago
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Updated 2 years ago
- BEAV: Bacterial Element Annotation reVamped☆72Updated 2 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Predict plasmids from uncorrected long read data☆41Updated 5 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆62Updated 2 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆42Updated 5 years ago
- Identify phage regions in bacterial genomes for masking purposes☆34Updated 6 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54Updated 2 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆31Updated last month
- Bifrost graph gene caller.☆95Updated last month
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆64Updated this week
- A pipeline for bioinformatics analysis of bacterial genomes☆30Updated last week
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 3 months ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago