wtmatlock / flanker
Gene-flank analysis tool
☆26Updated last month
Alternatives and similar repositories for flanker:
Users that are interested in flanker are comparing it to the libraries listed below
- Bacterial GWAS analysis☆34Updated last month
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 3 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- Identify phage regions in bacterial genomes for masking purposes☆30Updated 5 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆34Updated last month
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- Calculate assocations between genes and traits☆20Updated 2 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆51Updated last month
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated last year
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- IslandPath standalone software☆31Updated last year
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- Gene Absence Presence Identification tool.☆26Updated last year
- Recombination-free trees☆56Updated last year
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆25Updated 2 months ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆23Updated last year
- Predict plasmids from uncorrected long read data☆39Updated 5 years ago
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆27Updated last year
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Updated last year
- Improvement of metagenome-assembled genomes☆50Updated 4 years ago
- Discover and annotate the virome☆35Updated 3 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆37Updated 3 months ago
- A tool for removing redundant genomes from a set of assemblies☆70Updated last year
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆46Updated 2 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆25Updated 2 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated last year
- Split Kmer Analysis☆63Updated 2 years ago
- ☆18Updated 4 months ago