Megagenomics / FastProNGSLinks
A tool used to cut adapter / qc / trimming / split / statistics for fastq data, it was developed in C.
☆10Updated 7 years ago
Alternatives and similar repositories for FastProNGS
Users that are interested in FastProNGS are comparing it to the libraries listed below
Sorting:
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆53Updated last year
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Updated 6 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Structural variant caller☆55Updated 4 years ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- ☆33Updated 3 years ago
- new repo☆28Updated 4 years ago
- 🏔 coverage extraction from BAM/CRAM files, supporting targets 📊☆65Updated last month
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated 2 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 6 months ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated 2 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆53Updated 10 months ago
- Long-read splice alignment with high accuracy☆64Updated last year
- Population-wide Deletion Calling☆35Updated 9 months ago
- Pan-Genomic Matching Statistics☆55Updated last year
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- Remove lambda phage reads from a fastq file☆29Updated 3 years ago
- In-silico PCR, primer design and padlock design for in-situ sequencing☆53Updated last week
- Generate unique KMERs for every contig in a FASTA file☆48Updated 3 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- Working space for the GIAB TR benchmarking project☆23Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆47Updated 4 months ago
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- Adapters for trimming☆30Updated 6 years ago
- A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes☆51Updated last year
- Python package and routines for merging VCF files☆29Updated 4 years ago