Megagenomics / FastProNGS
A tool used to cut adapter / qc / trimming / split / statistics for fastq data, it was developed in C.
☆10Updated 6 years ago
Related projects ⓘ
Alternatives and complementary repositories for FastProNGS
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 3 years ago
- URMAP ultra-fast read mapper☆39Updated 4 years ago
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆17Updated 4 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 2 years ago
- fastq quality assessment and filtering tool☆18Updated last year
- Fast in-silico normalization algorithm for NGS data☆22Updated 3 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆45Updated 5 years ago
- Combine reference and assembled transcriptomes for RNA-Seq analysis☆21Updated 4 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 6 years ago
- The shiny app that accompanies the ngsReports R package☆14Updated 3 years ago
- Trimming tool for Oxford Nanopore sequence data☆22Updated 3 years ago
- high-throughput primer design and graphical visualization☆9Updated 7 years ago
- Find Unique genomic Regions☆29Updated this week
- TreeBeST: Tree Building guided by Species Tree☆14Updated 13 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated 6 months ago
- BitMapperBS: a fast and accurate read aligner for whole-genome bisulfite sequencing☆28Updated 5 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆59Updated 4 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆54Updated this week
- Improved Phased Assembler☆28Updated 2 years ago
- WGS (Wheat) Robust Assembly Pipeline☆22Updated 3 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆43Updated 2 years ago
- Metagenomics microbial abundance quantification☆27Updated 2 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 4 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- toolkit to process gtf files☆16Updated 2 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 2 years ago
- new repo☆27Updated 3 years ago
- Population-wide Deletion Calling☆35Updated 2 months ago