A tool used to cut adapter / qc / trimming / split / statistics for fastq data, it was developed in C.
☆10Apr 9, 2018Updated 7 years ago
Alternatives and similar repositories for FastProNGS
Users that are interested in FastProNGS are comparing it to the libraries listed below
Sorting:
- Fast, sensitive and accurate protein remote homology search on GPUs☆16May 6, 2024Updated last year
- CLI to automate Nextflow pipeline testing☆12Dec 15, 2025Updated 3 months ago
- Qiime2 snakemake pipeline☆20Dec 21, 2023Updated 2 years ago
- Structural variant pipeline☆18Jun 25, 2020Updated 5 years ago
- Command Line Snake Game written in BASH☆12Jan 3, 2018Updated 8 years ago
- Viral genome coverage evaluation for metagenomic diagnostics☆27Aug 19, 2025Updated 7 months ago
- Phylogenetic Likelihood Library☆29Dec 3, 2020Updated 5 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆24Sep 7, 2019Updated 6 years ago
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Jul 3, 2025Updated 8 months ago
- Annotate your metagenome assemblies☆11Jul 19, 2018Updated 7 years ago
- 16S pipeline using qiime2 created with snakemake☆12Jan 2, 2026Updated 2 months ago
- A Python package for fast operations on 1-dimensional genomic signal tracks☆23Apr 3, 2020Updated 5 years ago
- Nextflow language support for Visual Studio Editor☆37Feb 27, 2026Updated 3 weeks ago
- This is repo for the materials of the BI2023 python course☆21May 4, 2024Updated last year
- The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline☆41Dec 8, 2022Updated 3 years ago
- Identify phage regions in bacterial genomes for masking purposes☆33Sep 5, 2019Updated 6 years ago
- ☆10Nov 4, 2021Updated 4 years ago
- Module and script to remove contamination in assembled genomes before submission to ncbi☆14Jul 28, 2025Updated 7 months ago
- Data Science micro tutorials using Python☆23Aug 23, 2022Updated 3 years ago
- De novo genome assembler.☆11Jul 30, 2018Updated 7 years ago
- Script for generating PNG preview from asciicast JSON file☆14Apr 13, 2022Updated 3 years ago
- heterogeneous BLAST (H-BLAST), a fast parallel search tool for a heterogeneous computer that couples CPUs and GPUs, to accelerate BLASTX…☆12Jun 20, 2018Updated 7 years ago
- AncestralClust☆11Jul 9, 2025Updated 8 months ago
- Metagenomic search for novel CRISPR-transposons☆12Sep 30, 2021Updated 4 years ago
- Single cell analysis in Javascript☆23Nov 28, 2025Updated 3 months ago
- A fast, compact trigram library for Icelandic.☆11Dec 12, 2025Updated 3 months ago
- PgRC: Pseudogenome based Read Compressor☆14Nov 20, 2024Updated last year
- Virtual screening and cheminformatics utilities☆14Jan 20, 2016Updated 10 years ago
- EPSAPG: An Extensive Protein Sequence Alignment Profiles Generator Pipeline Combining MMseqs2 and PSI-BLAST☆11Apr 4, 2024Updated last year
- Supplementary Material to accompany the paper, DJ Warne, SA Sisson, C Drovandi (2019) Acceleration of expensive computations in Bayesian…☆13Oct 23, 2020Updated 5 years ago
- mreps: software for tandem repeat identification in DNA☆15Nov 13, 2019Updated 6 years ago
- Go port of wyhash v3☆14Nov 1, 2022Updated 3 years ago
- JPEG image codec that uses SIMD instructions (MMX, SSE2, NEON, AltiVec) to accelerate baseline JPEG compression and decompression on x86,…☆10Jun 21, 2017Updated 8 years ago
- A python tool for numerically encoding protein sequences based on PSSM profile☆13Jun 25, 2021Updated 4 years ago
- elPrep reimplementations in C++ and Java, only for benchmark comparisons☆10Feb 13, 2023Updated 3 years ago
- Utilities to detect and profile `het-kmers`☆12Aug 5, 2024Updated last year
- ☆17Sep 10, 2024Updated last year
- Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data☆31Feb 7, 2026Updated last month
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago