j-levy / bwa-gasal2Links
BWA-MEM program accelerated with the GASAL2 library
☆18Updated 5 years ago
Alternatives and similar repositories for bwa-gasal2
Users that are interested in bwa-gasal2 are comparing it to the libraries listed below
Sorting:
- BWA-MEM program accelerated with the GPUSeed and GASAL2 libraries☆16Updated 2 years ago
- Variant catalogue pipeline☆25Updated last month
- Somatic point mutation caller☆17Updated 8 years ago
- GenomeFlow: A Graphical Tool for Modeling and Analyzing 3D Genome Structure☆22Updated 6 years ago
- Streamlined duo/trio analysis and pedigree haplotyping: from VCF to interactive HTML☆15Updated 7 months ago
- Portable database of microhaplotype marker and allele frequency data☆10Updated last month
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆28Updated last year
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- Tool package to perform in-silico CRISPR analysis and assessment☆27Updated last year
- Ultra rapid nanopore whole genome sequencing pipeline, published in https://www.nature.com/articles/s41587-022-01221-5☆20Updated 11 months ago
- Deep Learning based variant calling toolkit - https://clara-parabricks.github.io/VariantWorks/☆45Updated 2 years ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Updated last year
- A method to identify structural variation from sequencing data in target regions☆31Updated 4 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆38Updated 2 years ago
- Open-source opinionated Galaxy-based framework for microbiota analysis☆14Updated 4 years ago
- Digenome-toolkit ver2.☆16Updated 3 years ago
- Debarcer: A package for De-Barcoding and Error Correction of sequencing data containing molecular barcodes☆15Updated 4 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- VEP Plugin to annotate high-impact five prime UTR variants☆27Updated 9 months ago
- interactive Multi Objective K-mer Analysis☆23Updated 2 years ago
- Useful tools for working with Salmon output☆38Updated 4 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated last year
- CNV Rapid Aberration Detection And Reporting☆12Updated 4 years ago
- AirLift is a tool that updates mapped reads from one reference genome to another. Unlike existing tools, It accounts for regions not shar…☆27Updated last year
- 180+ Java applications for analyzing next generation sequencing data from ChIPSeq, RNASeq, BisSeq, DNASeq, variant annotation/ filtering,…☆18Updated last week
- TREDPARSE: HLI Short Tandem Repeat (STR) caller☆25Updated 4 years ago
- A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data☆44Updated 6 months ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 3 years ago
- ☆25Updated 4 years ago