joan-smith / genomic-features-survivalLinks
Scripts supporting identification of genomic features affecting survival time in cancer
☆12Updated 6 years ago
Alternatives and similar repositories for genomic-features-survival
Users that are interested in genomic-features-survival are comparing it to the libraries listed below
Sorting:
- Building the constrained coding regions (CCR) model☆16Updated 6 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated last year
- Comprehensive Human Expressed SequenceS☆17Updated 10 months ago
- Convert VCF (Variant Call Format) into TCGA MAF (Mutation Annotation Format)☆14Updated 8 years ago
- stageR package☆13Updated 2 years ago
- ☆29Updated 4 years ago
- A Weighted Exact Test for Mutually Exclusive Mutations in Cancer☆21Updated 6 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 10 months ago
- Differential ATAC-seq toolkit☆27Updated last year
- GO-PCA: An Unsupervised Method to Explore Gene Expression Data Using Prior Knowledge☆14Updated 7 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆28Updated 3 years ago
- T cell Receptor and B cell Receptor assembly from single cell RNA sequencing data☆10Updated 7 years ago
- Toolkit for benchmarking fusion transcript predictions☆19Updated 10 months ago
- A Feature Density Estimator for High-Throughput Sequence Tags☆23Updated 4 years ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆16Updated 7 years ago
- Code to run OncoSig Analyses☆18Updated 4 years ago
- ☆17Updated last year
- Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python☆21Updated 2 years ago
- JEME method for predicting enhancer targets☆11Updated 7 years ago
- WES HLA Typing based on multiple alternative tools☆17Updated 4 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 3 months ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆50Updated 5 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 3 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- Single cell interactive plotting tools☆23Updated 5 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- ☆22Updated last year
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 5 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 7 years ago