mhalushka / miRgeLinks
miRge - microRNA alignment software for small RNA-seq data, now at v2.0
☆27Updated 3 years ago
Alternatives and similar repositories for miRge
Users that are interested in miRge are comparing it to the libraries listed below
Sorting:
- Filters for false-positive mutation calls in NGS☆32Updated 6 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆38Updated last year
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Flexible Bayesian inference of mutational signatures☆36Updated 2 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆22Updated 3 months ago
- Workflow for Sequenza, cellularity and ploidy☆20Updated last week
- Useful tools for working with Salmon output☆38Updated 5 years ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 5 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- Visualization tool for temporal clonal evolution.☆17Updated 5 years ago
- DriverPower☆26Updated 7 months ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆36Updated 3 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 4 years ago
- ChIP-seq DC and QC Pipeline☆35Updated 4 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 5 months ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆18Updated 2 weeks ago
- Codes and Data for FFPEsig manuscript☆17Updated last year
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 5 months ago
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- Toolkit for benchmarking fusion transcript predictions☆19Updated last year
- ☆33Updated 3 years ago
- ☆18Updated 6 years ago
- Multi-sample cancer phylogeny reconstruction☆35Updated 7 years ago
- The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating fro…☆36Updated last year