mhalushka / miRgeLinks
miRge - microRNA alignment software for small RNA-seq data, now at v2.0
☆27Updated 3 years ago
Alternatives and similar repositories for miRge
Users that are interested in miRge are comparing it to the libraries listed below
Sorting:
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Flexible Bayesian inference of mutational signatures☆37Updated 2 years ago
- ☆17Updated last year
- Workflow for Sequenza, cellularity and ploidy☆24Updated 3 months ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆41Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆30Updated last year
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 7 years ago
- iread☆25Updated 4 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆36Updated 3 years ago
- DriverPower☆26Updated 10 months ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆22Updated 9 years ago
- Multi-sample cancer phylogeny reconstruction☆36Updated 8 years ago
- Codes and Data for FFPEsig manuscript☆17Updated last year
- MSKCC Reis-Filho Lab pipeline thingy☆18Updated last month
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 5 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Transcriptome-wide network☆16Updated 6 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆19Updated last month
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆16Updated 7 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- ☆33Updated 3 years ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Updated 2 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 8 months ago
- ☆23Updated 4 years ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆24Updated last month
- chia pet analysis software☆25Updated 6 years ago