Alternatives and similar repositories for eigensoft:

Users that are interested in eigensoft are comparing it to the libraries listed below

• rwdavies / QUILT
  QUILT: Low coverage whole genome sequence imputation with large reference panels
  ☆55Updated 2 months ago
• MorrellLAB / sequence_handling
  A series of scripts to automate sequence workflows
  ☆19Updated 4 months ago
• danjlawson / badMIXTURE
  R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes
  ☆23Updated 5 years ago
• roberta-davidson / ADMIXTURE-smartPCA-PLINK-and-EIGENSOFT
  Scripts and notes on how to analyse ancient DNA genotype data to understand population structure
  ☆30Updated last year
• augusto-garcia / onemap
  Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…
  ☆36Updated last year
• KeinanLab / xwas-3.0
  A Toolset for Chromosome X-Wide Association Studies
  ☆10Updated 6 years ago
• whweve / IntAssoPlot
  ☆16Updated 11 months ago
• sriramlab / SCOPE
  Scalable population structure inference
  ☆18Updated 2 years ago
• YTLogos / ttplot
  Tao Yan's Plot Toolkit
  ☆11Updated 5 years ago
• TCLamnidis / AdmixturePlotter
  An R script to generate plots for ADMIXTURE runs, for multiple K values.
  ☆17Updated last year
• jaredgk / PPP
  Repository for pipeline code
  ☆24Updated 10 months ago
• ksiewert / BetaScan
  Genome-wide scan for balancing selection using beta statistic
  ☆28Updated last year
• chaolongwang / SEEKIN
  SEEKIN: SEquence-based Estimation of KINship
  ☆14Updated 7 years ago
• johanzi / gwas_gemma
  Perform GWAS with gemma in a simple pipeline
  ☆25Updated 2 years ago
• browning-lab / flare
  The flare program performs local ancestry inference
  ☆33Updated 2 months ago
• statgen / emeraLD
  tools to efficiently retrieve and calculate LD
  ☆32Updated 3 years ago
• mailund / admixture_graph
  Module for analysing admixture graphs
  ☆28Updated 6 years ago
• Rosemeis / HaploNet
  Haplotype and population structure inference using neural networks.
  ☆27Updated last month
• ANGSD / NgsRelate
  ☆43Updated last year
• MerrimanLab / selectionTools
  Pipeline to take VCF through to Selection Analysis.
  ☆58Updated 2 years ago
• andrewparkermorgan / argyle
  An R package for import, QC and analysis of Illumina Infinium genotyping arrays
  ☆33Updated 6 years ago
• saralpulit / gwas-scripts
  A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…
  ☆20Updated 7 years ago
• yairf / SDS
  R code to compute the Singleton Density Score (SDS)
  ☆28Updated 8 years ago
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆41Updated 5 years ago
• hemstrow / snpR
  ☆29Updated last week
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated last month
• devillemereuil / bayescenv
  BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.
  ☆19Updated 7 years ago
• georgebusby / admixture_in_africa
  analysis and plotting code for "Admixture into and within Africa" by George Busby et al 2016 (eLife)
  ☆11Updated 8 years ago
• timbeissinger / Maize-Teo-Scripts
  ☆17Updated 9 years ago
• mcstitzer / maize_genomic_ecosystem
  ☆11Updated 2 years ago