apcamargo / tspexLinks
tspex: tissue-specificity calculator
☆32Updated 2 years ago
Alternatives and similar repositories for tspex
Users that are interested in tspex are comparing it to the libraries listed below
Sorting:
- ☆32Updated 3 weeks ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆35Updated 6 years ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆25Updated 3 months ago
- Long-read Isoform Quantification and Analysis☆38Updated 5 months ago
- Long read to rMATS☆32Updated 2 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆50Updated 5 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated 2 years ago
- Phylogenetic analysis of multi-species genome sequence alignments to identify conserved protein-coding regions☆66Updated last year
- Evolutionary Transcriptomics with R☆45Updated this week
- Pipeline for Phylostratigraphy☆13Updated 2 years ago
- ☆36Updated 2 years ago
- visual analysis of your VCF files☆36Updated 2 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 10 months ago
- A python package and a set of shell commands to handle GTF files☆49Updated last year
- ☆34Updated last year
- Merging paired-end reads and removing adapters☆46Updated 5 months ago
- An efficient way to guess the library type of your RNA-Seq data.☆31Updated 2 years ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 3 months ago
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Updated last year
- ☆16Updated last month
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 11 months ago
- A script to make downloading of SRA/GEO data easier☆31Updated last year
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆63Updated 10 months ago
- for visual evaluation of read support for structural variation☆54Updated last year
- Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing☆16Updated 2 years ago
- A software for calculating telomere length☆70Updated 6 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets☆34Updated 4 months ago