apcamargo / RNAsambaLinks
A tool for computing the coding potential of RNA transcript sequences using deep learning classification model
☆54Updated 2 years ago
Alternatives and similar repositories for RNAsamba
Users that are interested in RNAsamba are comparing it to the libraries listed below
Sorting:
- Reference-guided multiple sequence alignment of viral genomes☆68Updated 4 months ago
- A genome browser in your Jupyter notebook☆31Updated 3 weeks ago
- RNA modifications detection from Nanopore dRNA-Seq data☆84Updated 2 weeks ago
- Tool package to perform in-silico CRISPR analysis and assessment☆27Updated last year
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆58Updated last year
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- Computational pipeline for calling consensi on R2C2 nanopore data☆31Updated 3 years ago
- Variant calling tool for long-read sequencing data☆110Updated 2 months ago
- A package to annotate protein sequences☆58Updated 3 months ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆52Updated 2 years ago
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆34Updated 11 months ago
- Materials for Spring 2021 Applied Genomics Course☆53Updated 4 years ago
- gatk4 RNA variant calling pipeline☆47Updated last month
- perSVade: personalized Structural Variation detection☆39Updated 3 months ago
- Python bindings for the TaxonKit library☆40Updated 3 weeks ago
- showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.☆30Updated 6 years ago
- Quality of life improvements for Bioinformatics in Python.☆29Updated this week
- Master of Pores 2☆23Updated 6 months ago
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆62Updated 2 months ago
- Merging paired-end reads and removing adapters☆44Updated 2 months ago
- Fast FASTQ sample demultiplexing in Rust.☆62Updated last week
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated last year
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆57Updated last year
- Fast and flexible ORF finder☆69Updated 3 years ago
- Error correction for Illumina RNA-seq reads☆67Updated last year
- viral-ngs: complete pipelines☆63Updated 2 weeks ago
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆52Updated this week
- A python package and a set of shell commands to handle GTF files☆48Updated 11 months ago
- ☆32Updated last year
- cDNA read preprocessing☆71Updated 10 months ago