apcamargo / RNAsambaLinks
A tool for computing the coding potential of RNA transcript sequences using deep learning classification model
☆55Updated 2 years ago
Alternatives and similar repositories for RNAsamba
Users that are interested in RNAsamba are comparing it to the libraries listed below
Sorting:
- Python bindings for the TaxonKit library☆41Updated last month
- Tool package to perform in-silico CRISPR analysis and assessment☆29Updated last year
- Bacterial Annotation by Learned Representation of Genes☆57Updated 4 years ago
- ARTIC SARS-CoV-2 workflow and reporting☆50Updated 3 months ago
- Simple phylogenetic tree visualization python package for phylogenetic analysis☆50Updated 10 months ago
- ☆131Updated 11 months ago
- This repository hosts a large collection of Nextflow snippets☆57Updated 6 months ago
- gatk4 RNA variant calling pipeline☆51Updated last month
- Fast and flexible ORF finder☆73Updated 3 years ago
- Reference-guided multiple sequence alignment of viral genomes☆70Updated 2 months ago
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆59Updated last year
- An efficient CLI to extract sequences from the SRA☆111Updated last week
- ☆36Updated last month
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆54Updated this week
- SARS-CoV-2 workflow for nanopore sequence data☆41Updated this week
- Making bioinformatics fun again☆75Updated 2 months ago
- Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.☆59Updated 4 years ago
- A genome browser in your Jupyter notebook☆31Updated 2 months ago
- NEAT (NExt-generation Analysis Toolkit) simulates next-gen sequencing reads and can learn simulation parameters from real data.☆59Updated this week
- ClairS - a deep-learning method for long-read somatic small variant calling☆87Updated last month
- A tool for simulating random mutations in any genome☆42Updated last year
- Simple bacterial assembly and annotation pipeline☆76Updated last week
- Calculate dN/dS ratio precisely (Ka/Ks) using a codon-by-codon counting method.☆25Updated 7 years ago
- Comparative Genomics Toolkit 3☆132Updated this week
- A lightweight platform-accelerated library for biological motif scanning using position weight matrices.☆53Updated 2 months ago
- Computational pipeline for calling consensi on R2C2 nanopore data☆31Updated 3 years ago
- Config files used to define parameters specific to compute environments at different Institutions☆103Updated last week
- expressions on VCFs☆85Updated 3 months ago
- Variant calling tool for long-read sequencing data☆112Updated 4 months ago
- viral-ngs: complete pipelines☆65Updated last week