apcamargo / RNAsambaLinks
A tool for computing the coding potential of RNA transcript sequences using deep learning classification model
☆55Updated 3 years ago
Alternatives and similar repositories for RNAsamba
Users that are interested in RNAsamba are comparing it to the libraries listed below
Sorting:
- Python bindings for the TaxonKit library☆40Updated 4 months ago
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆35Updated last year
- Fast and flexible ORF finder☆76Updated 3 years ago
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆59Updated last year
- ARTIC SARS-CoV-2 workflow and reporting☆50Updated 6 months ago
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆54Updated 2 months ago
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆36Updated last year
- gatk4 RNA variant calling pipeline☆55Updated this week
- Tool package to perform in-silico CRISPR analysis and assessment☆32Updated last month
- POSTRE: Prediction Of STRuctural variant Effects☆28Updated 8 months ago
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆56Updated 2 years ago
- Bacterial Annotation by Learned Representation of Genes☆58Updated 4 years ago
- A lightweight platform-accelerated library for biological motif scanning using position weight matrices.☆57Updated 2 months ago
- Calculate dN/dS ratio precisely (Ka/Ks) using a codon-by-codon counting method.☆25Updated 7 years ago
- Ultrafast DNA methylation heterogeneity calculation from bisulfite alignments (Lee et al., PLOS Computational Biology. 2023)☆47Updated 2 months ago
- ClairS - a deep-learning method for long-read somatic small variant calling☆95Updated 3 months ago
- Find common blocks and differences between DNA sequences☆42Updated 6 months ago
- A genome browser in your Jupyter notebook☆31Updated 5 months ago
- Parse GFF3 into Pandas dataframes☆30Updated last year
- A package to annotate protein sequences☆60Updated 8 months ago
- ☆38Updated this week
- Variant calling tool for long-read sequencing data☆112Updated 7 months ago
- Making bioinformatics fun again☆74Updated 2 weeks ago
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆56Updated 8 months ago
- A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.☆39Updated 2 weeks ago
- PiGx SARS-CoV-2 wastewater sequencing pipeline☆18Updated 2 years ago
- Computational pipeline for calling consensi on R2C2 nanopore data☆31Updated 3 years ago
- Fasten toolkit, for streaming operations on fastq files☆80Updated last week
- viral-ngs: complete pipelines☆67Updated last week
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆43Updated 2 months ago