apcamargo / RNAsambaLinks
A tool for computing the coding potential of RNA transcript sequences using deep learning classification model
☆54Updated 2 years ago
Alternatives and similar repositories for RNAsamba
Users that are interested in RNAsamba are comparing it to the libraries listed below
Sorting:
- A genome browser in your Jupyter notebook☆31Updated 2 months ago
- MeShClust: an intelligent tool for clustering DNA sequences☆38Updated 3 years ago
- Python bindings for the TaxonKit library☆41Updated 3 weeks ago
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆59Updated last year
- Tool package to perform in-silico CRISPR analysis and assessment☆29Updated last year
- Reference-guided multiple sequence alignment of viral genomes☆70Updated last month
- ARTIC SARS-CoV-2 workflow and reporting☆50Updated 2 months ago
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆53Updated 4 months ago
- Bacterial Annotation by Learned Representation of Genes☆57Updated 4 years ago
- POSTRE: Prediction Of STRuctural variant Effects☆27Updated 4 months ago
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆53Updated 2 weeks ago
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆33Updated last year
- Parse GFF3 into Pandas dataframes☆28Updated last year
- The Flexible Demultiplexer☆33Updated last week
- viral-ngs: complete pipelines☆64Updated this week
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆56Updated last year
- An efficient CLI to extract sequences from the SRA☆110Updated 3 weeks ago
- Computational pipeline for calling consensi on R2C2 nanopore data☆31Updated 3 years ago
- Making bioinformatics fun again☆73Updated last month
- PiGx SARS-CoV-2 wastewater sequencing pipeline☆18Updated 2 years ago
- Master of Pores 2☆23Updated 7 months ago
- A package to annotate protein sequences☆59Updated 4 months ago
- Python3 scripts to manipulate FASTA and FASTQ files☆71Updated 3 months ago
- showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.☆30Updated 6 years ago
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆34Updated last year
- bioinformatics toolkit in rust☆90Updated last month
- Clair3-RNA - a long-read small variant caller for RNA sequencing data☆23Updated 3 months ago
- Variant calling tool for long-read sequencing data☆111Updated 4 months ago
- SARS-CoV-2 workflow for nanopore sequence data☆41Updated last month
- visual analysis of your VCF files☆34Updated 2 years ago