pwwang / biopipenLinks
A set of processes/pipelines for bioinformatics
☆13Updated last week
Alternatives and similar repositories for biopipen
Users that are interested in biopipen are comparing it to the libraries listed below
Sorting:
- R-package to perform metabolomics pre-processing, differential metabolite analysis, metabolite clustering and custom visualisations.☆16Updated last week
- Visualize cancer genomes with FAIR single-cell RNA-seq data☆11Updated 2 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…☆14Updated 2 years ago
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16Updated 2 years ago
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆25Updated last year
- ☆16Updated 2 years ago
- PathIntegrate Python package for pathway-based multi-omics data integration☆16Updated 9 months ago
- Single-Cell Sequencing Quality Control and Processing Software☆16Updated 3 years ago
- GEO RNA-seq Experiments Processing Pipeline☆21Updated 5 years ago
- ☆28Updated last year
- The KEGGgraph package to parse KEGG pathways in R into graph objects☆14Updated 4 months ago
- Snakemake workflow to benchmark scRNA-seq data simulators☆13Updated 3 years ago
- Code associated with MIX-seq manuscript☆15Updated 5 years ago
- Kdrew's scripts for handling protein complex map data☆14Updated 2 months ago
- bioinformatics R test code☆14Updated 2 months ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆20Updated 4 months ago
- Analysis of snRNA-seq2 data coming from 3 months old mouse liver, dissecting the influence ploidy has on gene expression.☆13Updated 3 years ago
- ☆12Updated 4 years ago
- CircRNA testing and ploting R package☆10Updated 4 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Updated 4 years ago
- VirusScan Pipeline☆11Updated 6 months ago
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆29Updated 2 years ago
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆22Updated 4 years ago
- FUNctional toolKIt platform for multi-omic functional analysis. An standardised pipeline to analysis transcriptomic, proteomic, phospho…☆13Updated 3 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- ☆17Updated last year
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆19Updated 3 years ago
- GEMINI: A variational Bayesian approach to identify genetic interactions from combinatorial CRISPR screens☆16Updated 2 years ago