pwwang / biopipen
A set of processes/pipelines for bioinformatics
☆13Updated last week
Alternatives and similar repositories for biopipen:
Users that are interested in biopipen are comparing it to the libraries listed below
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆17Updated 3 weeks ago
- ESTIMATE tumor infiltration, the tidy way☆13Updated last year
- GEO RNA-seq Experiments Processing Pipeline☆21Updated 5 years ago
- 🐶 hlabud: HLA genotype analysis in R☆16Updated 7 months ago
- ☆15Updated 2 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 3 years ago
- Code for EpiMap data browser☆14Updated 7 months ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆16Updated 6 years ago
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…☆12Updated last year
- Efficiently compute robust markers across single-cell datasets☆11Updated 3 years ago
- Gene Expression Decomposition and Integration☆16Updated 5 months ago
- Visualize cancer genomes with FAIR single-cell RNA-seq data☆11Updated 2 years ago
- Gene Ontology Gene Sets from BioMart☆12Updated last year
- Multi-Omic Strategies for TWAS☆12Updated last year
- PhenomeXcan: mapping the genome to the phenome through the transcriptome☆11Updated 4 years ago
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…☆11Updated 3 months ago
- Galaxy Docker Image for the HiCExplorer☆10Updated 5 years ago
- Bedfile perturbation tool☆17Updated last year
- Personalized prioritization of driver genes in cancer☆9Updated 2 years ago
- Sparse Partial correlation ON Gene Expression - an R package for fast and robust ceRNA network inference☆11Updated 5 months ago
- ☆16Updated 2 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆13Updated 3 years ago
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆24Updated 5 months ago
- ☆18Updated 6 months ago
- Tools for assessing clustering robustness☆22Updated last week
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆18Updated 2 years ago
- ☆11Updated 3 years ago
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16Updated last year
- Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.☆12Updated last year