Alternatives and similar repositories for biopipen

Users that are interested in biopipen are comparing it to the libraries listed below

• yigbt / multiGSEA
  The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.
  ☆20Updated 2 months ago
• vanallenlab / retained-intron-neoantigen-pipeline
  Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.
  ☆29Updated 4 years ago
• berilerdogdu / SPIT
  DTU analysis tool inspired by llamas
  ☆12Updated 3 months ago
• NCBI-Hackathons / The-Broad-Institute-Single-Cell-RNA-Seq-Data-Set
  Visualize cancer genomes with FAIR single-cell RNA-seq data
  ☆12Updated 3 years ago
• saezlab / MetaProViz
  R-package to perform metabolomics pre-processing, differential metabolite analysis, metabolite clustering and custom visualisations.
  ☆16Updated this week
• saezlab / ShinyFUNKI
  FUNctional toolKIt platform for multi-omic functional analysis. An standardised pipeline to analysis transcriptomic, proteomic, phospho…
  ☆14Updated 4 years ago
• JamesJoly / DGSEA
  An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…
  ☆14Updated 2 years ago
• kuijjerlab / PySNAIL
  Smooth-quantile Normalization Adaptation for Inference of co-expression Links
  ☆16Updated 2 years ago
• icbi-lab / NeoFuse
  NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.
  ☆20Updated 3 years ago
• Xinglab / IRIS
  IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening
  ☆28Updated last year
• slowkow / hlabud
  🐶 hlabud: HLA genotype analysis in R
  ☆17Updated 9 months ago
• YuLab-SMU / clusterProfiler_protocol
  omics data analysis using clusterProfiler ;)
  ☆15Updated last year
• yachielab / Interstellar
  INTERSTELLAR: Interpretation, scalable transformation, and emulation of large-scale sequencing reads
  ☆17Updated last year
• califano-lab / OncoSig
  Code to run OncoSig Analyses
  ☆18Updated 5 years ago
• mikelove / zinbwave-deseq2
  Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq
  ☆30Updated 5 years ago
• broadinstitute / mix_seq_ms
  Code associated with MIX-seq manuscript
  ☆15Updated 5 years ago
• HelenaLC / simulation-comparison
  Snakemake workflow to benchmark scRNA-seq data simulators
  ☆14Updated 3 years ago
• jiujiezz / tsnad
  Detecting somatic mutations and predicting tumor-specific neo-antigens
  ☆29Updated 4 years ago
• const-ae / transformGamPoi-Paper
  ☆28Updated 2 years ago
• danro9685 / SparseSignatures
  Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…
  ☆11Updated 3 months ago
• Bishop-Laboratory / correlationAnalyzeR
  Generate Novel Insights from Gene Correlation Data
  ☆12Updated 3 years ago
• cwieder / py-ssPA
  Single sample pathway analysis tools for omics data
  ☆13Updated last year
• stephaniehicks / methylCC
  R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms
  ☆18Updated last month
• taoshengxu / CancerSubtypes
  ☆17Updated 3 years ago
• crazyhottommy / single-cell-DNAseq-notes
  ☆16Updated 3 years ago
• deeptools / docker-galaxy-hicexplorer
  Galaxy Docker Image for the HiCExplorer
  ☆10Updated 6 years ago
• hakyimlab / phenomexcan
  PhenomeXcan: mapping the genome to the phenome through the transcriptome
  ☆11Updated 5 years ago
• cwieder / PathIntegrate
  PathIntegrate Python package for pathway-based multi-omics data integration
  ☆18Updated last year
• sigven / oncoEnrichR
  Explore the cancer relevance of your gene list
  ☆52Updated last month
• khuranalab / CompositeDriver
  Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers
  ☆15Updated 7 years ago