Model-based analysis of APA using 3' end-linked reads
☆12Aug 14, 2021Updated 4 years ago
Alternatives and similar repositories for MAAPER
Users that are interested in MAAPER are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- APAlyzer is a toolkit for bioinformatic analysis of alternative polyadenylation (APA) events using RNA sequencing data. Our main approach…☆12Apr 5, 2026Updated last week
- ☆20Sep 28, 2019Updated 6 years ago
- Lightweight Alignment Based Resolution of Alternative Three Prime Ends☆10Jan 26, 2024Updated 2 years ago
- polyApipe☆19Feb 10, 2025Updated last year
- ☆12Dec 14, 2021Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆23May 16, 2020Updated 5 years ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆34Nov 8, 2023Updated 2 years ago
- Mapping 3′UTR alternative polyadenylation quantitative trait loci through population-scale transcriptomic and genomic data☆14Mar 15, 2023Updated 3 years ago
- snakemake-based workflows☆12Jul 20, 2022Updated 3 years ago
- Systematic analyses of intronic polyadenylation from standard RNAseq data☆16Sep 10, 2024Updated last year
- Peak calling tool for CLIP-seq data☆14Apr 7, 2021Updated 5 years ago
- ☆14Oct 5, 2023Updated 2 years ago
- RNA-seq Quantification of Alternative Polyadenylation☆51Mar 21, 2026Updated 3 weeks ago
- DLPRB: A Deep Learning Approach for Predicting Protein-RNA Binding☆13Nov 29, 2018Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆63Sep 12, 2023Updated 2 years ago
- apa: research platform for the study of alternative polyadenylation, expressRNA.org☆12Sep 2, 2021Updated 4 years ago
- Piranha is a peak-caller for CLIP- and RIP-seq data☆20Feb 7, 2018Updated 8 years ago
- ☆21Aug 26, 2024Updated last year
- CLIP Tool Kit (CTK)☆21Apr 28, 2024Updated last year
- ORF Quantification pipeline for Alternative Splicing☆16May 11, 2021Updated 4 years ago
- Community effort to evaluate computational methods for the detection and quantification of poly(A) sites and estimating their differentia…☆14Jan 11, 2024Updated 2 years ago
- An R package for Splice-aware quantification of translation using Ribo-seq data☆19Dec 20, 2023Updated 2 years ago
- CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.☆23Jan 15, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Quantification of isoform usage and alternative polyadenylation (APA) from single-cell RNA-seq using a Nextflow-based pipeline.☆32Nov 6, 2025Updated 5 months ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆29Jan 29, 2026Updated 2 months ago
- MISO: Mixture of Isoforms model for RNA-Seq isoform quantitation☆140Dec 15, 2022Updated 3 years ago
- CWL+Singularity implementation of an RNA editing workflow☆40Dec 18, 2020Updated 5 years ago
- An R package for finding non-adenosine residues in poly(A) tails of ONT direct RNA sequencing reads☆13Updated this week
- Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)☆209Apr 1, 2026Updated last week
- splicing and feature maps for RBPs☆25Mar 11, 2026Updated last month
- A collection of bioinformatics data analysis notebooks focused on providing examples of current best practices in sequencing data analysi…☆16Apr 1, 2026Updated last week
- CLIP-seq Analysis of Multi-mapped reads☆32Jul 20, 2021Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A Shiny-based framework to analyze and visualize interactively genomic data☆11May 11, 2023Updated 2 years ago
- R interface to megadepth: BigWig and BAM related utilities☆13Mar 31, 2026Updated 2 weeks ago
- Bullseye analysis pipeline for DART-seq analysis☆15Feb 28, 2026Updated last month
- APA Regression Net - Predict and Engineer Alternative Polyadenylation☆41Oct 1, 2021Updated 4 years ago
- Find CpG islands in genome☆11Mar 27, 2020Updated 6 years ago
- Exploring Isoform-specific interactions☆13Sep 16, 2025Updated 6 months ago
- Paired Replicate Analysis of Allelic Differential Splicing Events☆12Feb 21, 2023Updated 3 years ago