Alternatives and similar repositories for MAAPER

Users that are interested in MAAPER are comparing it to the libraries listed below

• ConesaLab / acorde
  Isoform co-usage networks from single-cell RNA-seq data
  ☆16Updated last year
• TheJacksonLaboratory / BRCA-LRseq-pipeline
  Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.
  ☆16Updated 3 years ago
• juliaolivieri / SpliZ_pipeline
  Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis
  ☆35Updated 4 years ago
• landau-lab / ONT-sc-splice
  Tools for detecting alternative splicing events and genotype in single-cell gene expression data.
  ☆15Updated 2 years ago
• huyustats / SCATS
  A statistical tool to detect differential alternative splicing events using single-cell RNA-seq
  ☆22Updated 2 years ago
• fmicompbio / monaLisa
  binned motif enrichment analysis and visualisation
  ☆45Updated 2 weeks ago
• bioinfo-biols / Code_for_circSC
  Analysis pipeline for our circSC manuscript
  ☆14Updated 3 years ago
• flemingtonlab / SpliceTools
  ☆17Updated last year
• ManchesterBioinference / IntegratingATAC-RNA-HiC
  scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper
  ☆25Updated 3 years ago
• markowetzlab / Drews2022_CIN_Compendium
  Main repository for Drews et al. (Nature, 2022)
  ☆42Updated 2 years ago
• a-velt / Mfuzz_RNAseq
  A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.
  ☆23Updated 6 years ago
• PCAWG-11 / Heterogeneity
  Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
  ☆44Updated 4 years ago
• ashleymaeconard / TIMEOR
  TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R
  ☆17Updated 3 years ago
• homeveg / nuctools
  software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data
  ☆17Updated 6 years ago
• davetang / defining_genomic_regions
  Define regions in the genome
  ☆33Updated 3 years ago
• PoolLab / ReferenceEnhancer
  ☆20Updated 2 years ago
• qqwang-berkeley / JUM
  A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns
  ☆30Updated 2 years ago
• tushiqi / MAnorm2
  MAnorm2 for Normalizing and Comparing ChIP-seq Samples
  ☆32Updated 3 years ago
• gxiaolab / mountainClimber
  ☆20Updated 6 years ago
• wenweixiong / MARVEL
  ☆54Updated last year
• ait5 / CNApp
  CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…
  ☆20Updated 6 years ago
• Xinglab / rMATS-long
  ☆34Updated 2 months ago
• ZhaozzReal / IPAFinder
  Systematic analyses of intronic polyadenylation from standard RNAseq data
  ☆16Updated last year
• gxiaolab / REDITs
  RNA editing tests
  ☆17Updated 5 years ago
• yizhak-lab-ccg / RNA_MUTECt_WMN
  ☆25Updated 3 years ago
• ans4013 / ScisorWiz
  ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data
  ☆20Updated last year
• bodegalab / irescue
  Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq
  ☆21Updated 2 weeks ago
• hemberg-lab / MicroExonator
  Snakemake pipeline for microexon discovery and quantification
  ☆20Updated last year
• UPSUTER / GEMLI
  ☆33Updated last year
• caleblareau / bap
  Bead-based single-cell atac processing
  ☆33Updated 4 years ago