Alternatives and similar repositories for MAAPER

Users that are interested in MAAPER are comparing it to the libraries listed below

• juliaolivieri / SpliZ_pipeline
  Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis
  ☆34Updated 3 years ago
• ConesaLab / acorde
  Isoform co-usage networks from single-cell RNA-seq data
  ☆16Updated last year
• bioinfo-biols / Code_for_circSC
  Analysis pipeline for our circSC manuscript
  ☆13Updated 3 years ago
• TheJacksonLaboratory / BRCA-LRseq-pipeline
  Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.
  ☆16Updated 3 years ago
• bodegalab / irescue
  Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq
  ☆17Updated 5 months ago
• landau-lab / ONT-sc-splice
  Tools for detecting alternative splicing events and genotype in single-cell gene expression data.
  ☆15Updated last year
• BMILAB / scAPAtrap
  ☆23Updated last year
• fmicompbio / monaLisa
  binned motif enrichment analysis and visualisation
  ☆41Updated 3 weeks ago
• PoolLab / ReferenceEnhancer
  ☆20Updated last year
• a-velt / Mfuzz_RNAseq
  A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.
  ☆22Updated 6 years ago
• huyustats / SCATS
  A statistical tool to detect differential alternative splicing events using single-cell RNA-seq
  ☆22Updated 2 years ago
• ManchesterBioinference / IntegratingATAC-RNA-HiC
  scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper
  ☆24Updated 2 years ago
• flemingtonlab / SpliceTools
  ☆17Updated last year
• deWitLab / GENOVA
  GENome Organisation Visual Analytics
  ☆16Updated 3 years ago
• Xinglab / rMATS-long
  ☆31Updated 8 months ago
• ans4013 / ScisorWiz
  ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data
  ☆16Updated last year
• wenweixiong / MARVEL
  ☆51Updated last year
• deWitLab / peakC
  Peak calling for 4C data
  ☆12Updated 7 years ago
• zhongw2 / GeneTEFlow
  ☆23Updated 4 years ago
• shizhuoxing / scISA-Tools
  single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…
  ☆25Updated last year
• salzman-lab / SICILIAN
  ☆22Updated last year
• Xinglab / CLAM
  CLIP-seq Analysis of Multi-mapped reads
  ☆31Updated 4 years ago
• ZhaozzReal / IPAFinder
  Systematic analyses of intronic polyadenylation from standard RNAseq data
  ☆13Updated 11 months ago
• eudoraleer / scasa
  SCASA: Single cell transcript quantification tool
  ☆21Updated last year
• JSB-UCLA / scReadSim
  A single cell sequencing read simulator.
  ☆33Updated 10 months ago
• tushiqi / MAnorm2
  MAnorm2 for Normalizing and Comparing ChIP-seq Samples
  ☆32Updated 2 years ago
• rnabioco / djvdj
  An R package to analyze single-cell V(D)J data
  ☆28Updated last year
• Aufiero / circRNAprofiler
  ☆10Updated 3 months ago
• markowetzlab / Drews2022_CIN_Compendium
  Main repository for Drews et al. (Nature, 2022)
  ☆42Updated 2 years ago
• aet21 / EpiSCORE
  Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles
  ☆33Updated 4 months ago