Alternatives and similar repositories for MAAPER:

Users that are interested in MAAPER are comparing it to the libraries listed below

• bioinfo-biols / Code_for_circSC
  Analysis pipeline for our circSC manuscript
  ☆13Updated 2 years ago
• flemingtonlab / SpliceTools
  ☆18Updated 8 months ago
• comprna / ORQAS
  ORF Quantification pipeline for Alternative Splicing
  ☆16Updated 3 years ago
• ans4013 / ScisorWiz
  ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data
  ☆15Updated 11 months ago
• zhejilab / RibORF
  Identifying genome-wide translated open reading frames using ribosome profiling
  ☆21Updated last year
• huyustats / SCATS
  A statistical tool to detect differential alternative splicing events using single-cell RNA-seq
  ☆22Updated last year
• ConesaLab / acorde
  Isoform co-usage networks from single-cell RNA-seq data
  ☆15Updated last year
• bodegalab / irescue
  Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq
  ☆16Updated last month
• matteocereda / RNAmotifs
  RNAmotifs is an integrated R, C++, python softwares that evaluates the sequence around differentially regulated alternative exons to iden…
  ☆9Updated 6 years ago
• Xinglab / CLAM
  CLIP-seq Analysis of Multi-mapped reads
  ☆29Updated 3 years ago
• TheJacksonLaboratory / BRCA-LRseq-pipeline
  Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.
  ☆14Updated 2 years ago
• TRON-Bioinformatics / splice2neo
  R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes
  ☆14Updated 2 weeks ago
• PoolLab / ReferenceEnhancer
  ☆20Updated last year
• eudoraleer / scasa
  SCASA: Single cell transcript quantification tool
  ☆20Updated last year
• icbi-lab / NeoFuse
  NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.
  ☆19Updated 2 years ago
• ManchesterBioinference / IntegratingATAC-RNA-HiC
  scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper
  ☆23Updated 2 years ago
• cole-trapnell-lab / pseudospace
  ☆12Updated 5 years ago
• ohlerlab / RiboseQC
  Pipeline for Quality Control of Ribo-Seq data, selection of P-site offsets, and codon usage statistics.
  ☆17Updated last year
• asoltis / MutEnricher
  Somatic coding and non-coding mutation enrichment analysis for tumor WGS data
  ☆10Updated 3 years ago
• lcalviell / ORFquant
  An R package for Splice-aware quantification of translation using Ribo-seq data
  ☆18Updated last year
• djhn75 / RNAEditor
  ☆15Updated 2 years ago
• juliaolivieri / SpliZ_pipeline
  Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis
  ☆32Updated 3 years ago
• smlmbrt / SimilarityRegression
  Predicting TF sequence-specificity similarity with weighted alignments
  ☆13Updated 5 years ago
• shizhuoxing / scISA-Tools
  single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…
  ☆24Updated 8 months ago
• aslihankarabacak / FootprintPipeline
  Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets
  ☆12Updated 6 years ago
• landau-lab / ONT-sc-splice
  Tools for detecting alternative splicing events and genotype in single-cell gene expression data.
  ☆13Updated last year
• henssenlab / TreeShapedRearrangements
  Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)
  ☆15Updated 4 years ago
• ChongJenniferZhang / CLCA_WGS
  ☆24Updated last year
• navinlabcode / ACT_paper
  Scripts used for the ACT paper
  ☆12Updated 3 years ago
• homeveg / nuctools
  software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data
  ☆17Updated 5 years ago