Alternatives and similar repositories for scipy19

Users that are interested in scipy19 are comparing it to the libraries listed below

• pkerpedjiev / negspy
  Python NGS Repository
  ☆9Updated 10 months ago
• open2c / looplib
  A library to analyse the structure of 1d loops and simulate loop extrusion by loop extruding factors.
  ☆10Updated 4 months ago
• HumanCellAtlas / table-testing
  requirements, examples, and tests for expression matrix file formats
  ☆22Updated 6 years ago
• higlass / higlass-server
  Server component for HiGlass that manages and serves tiled data
  ☆19Updated 2 years ago
• higlass / higlass-python
  Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer
  ☆59Updated last month
• nvictus / pybbi
  Python bindings to UCSC BigWig and BigBed library
  ☆33Updated 2 months ago
• manzt / pygv
  a minimal, scriptable genome browser for python
  ☆51Updated 6 months ago
• JEFworks-Lab / MERmaid
  WebGL-based viewer for spatially-resolved transcriptomics data
  ☆26Updated 2 years ago
• higlass / clodius
  Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.
  ☆39Updated last month
• gerlichlab / hicognition
  A visual exploration and hypothesis testing tool for 3D genomics
  ☆13Updated last year
• higlass / higlass-manage
  A utility script to manage local docker instances of HiGlass
  ☆24Updated last year
• higlass / higlass-arcs
  HiGlass track for displaying arcs between disconnected regions
  ☆9Updated 2 years ago
• flekschas / hipiler
  Visual exploration of large genome interaction matrices with interactive small multiples.
  ☆13Updated 3 years ago
• common-workflow-lab / wdl-cwl-translator
  A translator from WDL to CWL v1.2
  ☆27Updated this week
• higlass / higlass-docker
  Builds a docker container wrapping higlass-server and higlass-client in nginx
  ☆32Updated 3 years ago
• JEFworks / ubit2
  User-friendly Bioinformatics Tools
  ☆18Updated 4 years ago
• endrebak / poranges
  pyranges/bioframe for polars
  ☆18Updated last year
• sgkit-dev / bio2zarr
  Convert bioinformatics file formats to Zarr
  ☆36Updated 3 weeks ago
• HumanCellAtlas / sctools
  Utilities for large scale distributed single cell data processing
  ☆24Updated last week
• jupyter-widgets-contrib / ipyigv
  A Jupyter wrapper for the igv.js library (representation of genomic data)
  ☆26Updated 4 years ago
• alexpreynolds / soda
  Python-based UCSC genome browser snapshot-taker and gallery-maker
  ☆12Updated last year
• vierstralab / genome-tools
  Processing and plotting tools for genomics data
  ☆20Updated last month
• brentp / bw-python
  python wrapper to dpryan79's bigwig library using cffi
  ☆19Updated 9 years ago
• genepattern / genepattern-notebook
  Platform for integrating genomic analysis with Jupyter Notebooks.
  ☆44Updated 10 months ago
• GMOD / tabix-js
  Read Tabix-indexed files, either with .tbi or .csi indexes, in node or the browser
  ☆14Updated last week
• agalitsyna / avTAD
  Plotting average TAD heatmap for Hi-C data (give TAD segmentation and cool/hiclib interactions map).
  ☆10Updated 4 years ago
• hawkjo / SDRranger
  ☆10Updated 4 months ago
• VALIS-software / valis-hpgv
  High performance WebGL genome visualization
  ☆15Updated 3 years ago
• deeptools / HiCMatrix
  ☆13Updated last year
• mdshw5 / simplesam
  Simple pure Python SAM parser and objects for working with SAM records
  ☆64Updated 3 years ago