Alternatives and similar repositories for scipy19:

Users that are interested in scipy19 are comparing it to the libraries listed below

• pkerpedjiev / negspy
  Python NGS Repository
  ☆9Updated 8 months ago
• higlass / higlass-server
  Server component for HiGlass that manages and serves tiled data
  ☆19Updated last year
• higlass / clodius
  Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.
  ☆39Updated last week
• open2c / looplib
  A library to analyse the structure of 1d loops and simulate loop extrusion by loop extruding factors.
  ☆10Updated 2 months ago
• higlass / higlass-python
  Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer
  ☆59Updated last week
• HumanCellAtlas / table-testing
  requirements, examples, and tests for expression matrix file formats
  ☆22Updated 6 years ago
• nvictus / pybbi
  Python bindings to UCSC BigWig and BigBed library
  ☆32Updated 2 months ago
• gerlichlab / hicognition
  A visual exploration and hypothesis testing tool for 3D genomics
  ☆13Updated last year
• manzt / pygv
  a minimal, scriptable genome browser for python
  ☆50Updated 3 months ago
• HumanCellAtlas / sctools
  Utilities for large scale distributed single cell data processing
  ☆24Updated 2 months ago
• higlass / higlass-manage
  A utility script to manage local docker instances of HiGlass
  ☆24Updated last year
• higlass / higlass-docker
  Builds a docker container wrapping higlass-server and higlass-client in nginx
  ☆32Updated 2 years ago
• JEFworks-Lab / MERmaid
  WebGL-based viewer for spatially-resolved transcriptomics data
  ☆26Updated 2 years ago
• higlass / higlass-arcs
  HiGlass track for displaying arcs between disconnected regions
  ☆9Updated 2 years ago
• alexpreynolds / soda
  Python-based UCSC genome browser snapshot-taker and gallery-maker
  ☆12Updated 10 months ago
• JEFworks / ubit2
  User-friendly Bioinformatics Tools
  ☆18Updated 4 years ago
• brentp / bw-python
  python wrapper to dpryan79's bigwig library using cffi
  ☆19Updated 8 years ago
• sgkit-dev / bio2zarr
  Convert bioinformatics file formats to Zarr
  ☆32Updated this week
• flekschas / hipiler
  Visual exploration of large genome interaction matrices with interactive small multiples.
  ☆13Updated 3 years ago
• abdenlab / oxbow
  Read specialized NGS formats as data frames in R, Python, and more.
  ☆70Updated this week
• meuleman / epilogos
  Methods for summarizing and visualizing multi-biosample functional genomic annotations
  ☆45Updated 3 weeks ago
• hawkjo / SDRranger
  ☆10Updated 2 months ago
• endrebak / poranges
  pyranges/bioframe for polars
  ☆18Updated last year
• daler / hubward
  Manage the visualization of large amounts of other people's [often messy] genomics data
  ☆18Updated 9 years ago
• common-workflow-lab / wdl-cwl-translator
  A translator from WDL to CWL v1.2
  ☆27Updated 2 months ago
• laminlabs / nbproject
  Light-weight Jupyter notebook tracker.
  ☆34Updated last month
• vierstralab / genome-tools
  Processing and plotting tools for genomics data
  ☆20Updated last month
• jupyter-widgets-contrib / ipyigv
  A Jupyter wrapper for the igv.js library (representation of genomic data)
  ☆26Updated 4 years ago
• mdshw5 / simplesam
  Simple pure Python SAM parser and objects for working with SAM records
  ☆64Updated 2 years ago
• rjdkmr / gcMapExplorer
  Genome Contact Map Explorer - gcMapExplorer. Visit:
  ☆21Updated 3 years ago