Ready-to-go Parquet-formatted public 'omics datasets
☆30Nov 2, 2015Updated 10 years ago
Alternatives and similar repositories for eggo
Users that are interested in eggo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Population Stratification Analysis on Genomics Data Using Deep Learning☆25Sep 5, 2016Updated 9 years ago
- Parallel Genomic Analysis Toolkit☆14Feb 11, 2019Updated 7 years ago
- An example of bioinformatics and bigdata tools can playing nicely together☆14May 17, 2016Updated 10 years ago
- Integrate the GA4GH schemas and probably a scala impl of the service.☆14May 20, 2016Updated 10 years ago
- Benchmarking toolkit for variant calling☆48Oct 13, 2020Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.☆43Feb 13, 2026Updated 6 months ago
- SparkBWA is a new tool that exploits the capabilities of a Big Data technology as Apache Spark to boost the performance of one of the mos…☆70Sep 5, 2019Updated 6 years ago
- Bioinformatics Ketrew Pipelines☆27Nov 14, 2021Updated 4 years ago
- An RNA pipeline built on top of ADAM. Apache 2 licensed.☆19Jan 19, 2018Updated 8 years ago
- Efficient, distributed downloads of large files from S3 to HDFS using Spark.☆17Apr 26, 2017Updated 9 years ago
- General utility code used across BDG products. Apache 2 licensed.☆18Mar 17, 2026Updated 5 months ago
- Models and APIs for Genomic data. RETIRED 2018-01-24☆220Oct 28, 2022Updated 3 years ago
- Load genomic BAM files using Apache Spark☆21Jun 17, 2018Updated 8 years ago
- This repository implements converters and tools for working with NGS data in HPC or Hadoop cluster☆17Apr 13, 2018Updated 8 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Toil workflows for common genomic pipelines☆33Oct 3, 2019Updated 6 years ago
- Spark-based variant calling, with experimental support for multi-sample somatic calling (including RNA) and local assembly☆85Mar 22, 2026Updated 5 months ago
- Epigenetic Smoking status Estimator☆10Nov 24, 2020Updated 5 years ago
- In Silico Prediction of Novel Therapeutic Targets Using Gene – Disease Association Data☆18Jan 19, 2018Updated 8 years ago
- An extension for Jupyter notebooks that allows running notebooks inside a Docker container and converting them to runnable Docker images.☆28Aug 14, 2023Updated 3 years ago
- low-level helpers for Apache Spark libraries and tests☆16Dec 29, 2018Updated 7 years ago
- Open Targets Genetics UI☆15Jan 31, 2025Updated last year
- VariantSpark is a framework for applying Spark-based Machine Learning methods to whole-genome variant information☆33Sep 28, 2017Updated 8 years ago
- A Variant Caller, Distributed. Apache 2 licensed.☆72Mar 11, 2019Updated 7 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆30Oct 6, 2021Updated 4 years ago
- An example project for doing grid search in MLlib☆13Nov 27, 2014Updated 11 years ago
- Overlap assembler of paired-end DNA sequences generated by Illumina☆23Sep 2, 2016Updated 10 years ago
- Personalized cancer epitope discovery and peptide vaccine prediction pipeline☆30Nov 14, 2017Updated 8 years ago
- Cloud-scale differential expression for RNA-seq☆15May 23, 2023Updated 3 years ago
- ☆10Feb 3, 2020Updated 6 years ago
- ☆14Mar 26, 2024Updated 2 years ago
- 1,895 Git aliases and scripts☆29Updated this week
- A scalable genome browser. Apache 2 licensed.☆127Dec 2, 2022Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- requirements, examples, and tests for expression matrix file formats☆22Sep 18, 2018Updated 7 years ago
- R interface to Amazon' S3 storage☆12Apr 11, 2012Updated 14 years ago
- ☆10Mar 7, 2023Updated 3 years ago
- Selective Bayesian Forest Classifier - R package for simultaneous feature selection and classification. See paper: http://arxiv.org/abs/1…☆16Jan 15, 2022Updated 4 years ago
- Utilities for writing tests that use Apache Spark.☆24Dec 29, 2018Updated 7 years ago
- A sbt plugin that adds scala-notebook capabilities to sbt projects☆28Apr 15, 2015Updated 11 years ago
- A Clojure library to interactively analyze Hadoop cluster usage via REPL☆34Dec 20, 2013Updated 12 years ago