Ready-to-go Parquet-formatted public 'omics datasets
☆30Nov 2, 2015Updated 11 years ago
Alternatives and similar repositories for eggo
Users that are interested in eggo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Population Stratification Analysis on Genomics Data Using Deep Learning☆25Sep 5, 2016Updated 10 years ago
- Integrate the GA4GH schemas and probably a scala impl of the service.☆14May 20, 2016Updated 10 years ago
- Parallel Genomic Analysis Toolkit☆14Feb 11, 2019Updated 7 years ago
- An example of bioinformatics and bigdata tools can playing nicely together☆14May 17, 2016Updated 10 years ago
- Benchmarking toolkit for variant calling☆48Oct 13, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Efficient, distributed downloads of large files from S3 to HDFS using Spark.☆17Apr 26, 2017Updated 9 years ago
- Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.☆43Feb 13, 2026Updated 8 months ago
- Finding a scalable alternative to the VCF File for genomics analysis☆14Jan 5, 2017Updated 9 years ago
- Miscellaneous functionality for manipulating Apache Spark RDDs.☆22Dec 29, 2018Updated 7 years ago
- SparkBWA is a new tool that exploits the capabilities of a Big Data technology as Apache Spark to boost the performance of one of the mos…☆70Sep 5, 2019Updated 7 years ago
- A Variant Caller, Distributed. Apache 2 licensed.☆72Mar 11, 2019Updated 7 years ago
- Python-based UCSC genome browser snapshot-taker and gallery-maker☆12May 21, 2024Updated 2 years ago
- Use somatic mutations to choose a personalized cancer vaccine (tumor-specific immunogenic peptides)☆16Sep 23, 2016Updated 10 years ago
- Distributed ambiguous fragment assignment using eXpress and Spark.☆13Jan 13, 2016Updated 10 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework☆74Dec 2, 2022Updated 3 years ago
- Spark-based variant calling, with experimental support for multi-sample somatic calling (including RNA) and local assembly☆85Mar 22, 2026Updated 7 months ago
- a python api for higlass☆10Mar 15, 2023Updated 3 years ago
- This repository implements converters and tools for working with NGS data in HPC or Hadoop cluster☆17Apr 13, 2018Updated 8 years ago
- Models and APIs for Genomic data. RETIRED 2018-01-24☆220Oct 28, 2022Updated 4 years ago
- General utility code used across BDG products. Apache 2 licensed.☆18Mar 17, 2026Updated 7 months ago
- Toil workflows for common genomic pipelines☆33Oct 3, 2019Updated 7 years ago
- Core consonance utilities for scheduling, reporting on, and provisioning VMs for workflows☆14Jun 27, 2018Updated 8 years ago
- Subset of the kent source libraries (perhaps out of date) that are easily built and installed on OSX and Linux. These libraries provide u…☆13Oct 30, 2012Updated 14 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- In Silico Prediction of Novel Therapeutic Targets Using Gene – Disease Association Data☆18Jan 19, 2018Updated 8 years ago
- Epigenetic Smoking status Estimator☆10Nov 24, 2020Updated 5 years ago
- An extension for Jupyter notebooks that allows running notebooks inside a Docker container and converting them to runnable Docker images.☆28Aug 14, 2023Updated 3 years ago
- low-level helpers for Apache Spark libraries and tests☆16Dec 29, 2018Updated 7 years ago
- A userfriendly tool to create Social Snapshots of Facebook accounts☆11Nov 3, 2022Updated 3 years ago
- some general useful python tools for genomics☆20Aug 12, 2020Updated 6 years ago
- SEQSpark documentation☆18Nov 17, 2020Updated 5 years ago
- Open Targets Genetics UI☆15Jan 31, 2025Updated last year
- VariantSpark is a framework for applying Spark-based Machine Learning methods to whole-genome variant information☆33Sep 28, 2017Updated 9 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- This package includes a new cell reference for adult peripheral blood deconvolution arrayed using Illumina HumanMethylationEPIC☆10Sep 17, 2026Updated last month
- Scala client for the Lightning data visualization server (WIP)☆47Jun 25, 2019Updated 7 years ago
- ☆30Oct 6, 2021Updated 5 years ago
- Overlap assembler of paired-end DNA sequences generated by Illumina☆23Sep 2, 2016Updated 10 years ago
- Cloud-scale differential expression for RNA-seq☆15May 23, 2023Updated 3 years ago
- benchmarking challenge for spike detection in imaging data☆12Mar 6, 2017Updated 9 years ago
- ☆10Feb 3, 2020Updated 6 years ago