Ready-to-go Parquet-formatted public 'omics datasets
☆30Nov 2, 2015Updated 10 years ago
Alternatives and similar repositories for eggo
Users that are interested in eggo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Population Stratification Analysis on Genomics Data Using Deep Learning☆25Sep 5, 2016Updated 9 years ago
- Parallel Genomic Analysis Toolkit☆14Feb 11, 2019Updated 7 years ago
- An example of bioinformatics and bigdata tools can playing nicely together☆14May 17, 2016Updated 9 years ago
- Integrate the GA4GH schemas and probably a scala impl of the service.☆14May 20, 2016Updated 9 years ago
- Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.☆41Feb 13, 2026Updated last month
- SparkBWA is a new tool that exploits the capabilities of a Big Data technology as Apache Spark to boost the performance of one of the mos…☆69Sep 5, 2019Updated 6 years ago
- Bioinformatics Ketrew Pipelines☆28Nov 14, 2021Updated 4 years ago
- Efficient, distributed downloads of large files from S3 to HDFS using Spark.☆17Apr 26, 2017Updated 8 years ago
- Python-based UCSC genome browser snapshot-taker and gallery-maker☆12May 21, 2024Updated last year
- General utility code used across BDG products. Apache 2 licensed.☆18Updated this week
- This repository implements converters and tools for working with NGS data in HPC or Hadoop cluster☆17Apr 13, 2018Updated 7 years ago
- Load genomic BAM files using Apache Spark☆21Jun 17, 2018Updated 7 years ago
- Open Targets Genetics UI☆15Jan 31, 2025Updated last year
- Toil workflows for common genomic pipelines☆33Oct 3, 2019Updated 6 years ago
- Spark-based variant calling, with experimental support for multi-sample somatic calling (including RNA) and local assembly☆85Jan 13, 2018Updated 8 years ago
- Epigenetic Smoking status Estimator☆10Nov 24, 2020Updated 5 years ago
- requirements, examples, and tests for expression matrix file formats☆22Sep 18, 2018Updated 7 years ago
- An extension for Jupyter notebooks that allows running notebooks inside a Docker container and converting them to runnable Docker images.☆28Aug 14, 2023Updated 2 years ago
- In Silico Prediction of Novel Therapeutic Targets Using Gene – Disease Association Data☆18Jan 19, 2018Updated 8 years ago
- Secure Cloud Object REsource: file transfer microservice☆18Jan 26, 2026Updated last month
- A Variant Caller, Distributed. Apache 2 licensed.☆71Mar 11, 2019Updated 7 years ago
- ☆30Oct 6, 2021Updated 4 years ago
- VariantSpark is a framework for applying Spark-based Machine Learning methods to whole-genome variant information☆33Sep 28, 2017Updated 8 years ago
- Personalized cancer epitope discovery and peptide vaccine prediction pipeline☆30Nov 14, 2017Updated 8 years ago
- [NOTE: Repository has moved to github.com/amplab/spark-ec2]☆57Aug 10, 2015Updated 10 years ago
- Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy☆29Dec 22, 2022Updated 3 years ago
- ☆14Mar 26, 2024Updated last year
- A genomics pipeline build on top of the GATK Queue framework. Main repository: https://github.com/NationalGenomicsInfrastructure/piper (m…☆21Sep 6, 2016Updated 9 years ago
- Benchmarking toolkit for variant calling☆48Oct 13, 2020Updated 5 years ago
- A scalable genome browser. Apache 2 licensed.☆127Dec 2, 2022Updated 3 years ago
- ☆14Mar 6, 2026Updated 2 weeks ago
- Selective Bayesian Forest Classifier - R package for simultaneous feature selection and classification. See paper: http://arxiv.org/abs/1…☆16Jan 15, 2022Updated 4 years ago
- Risa allows to access metadata/data in ISA-tab format and builds Bioconductor data structures. Apart from parsing ISA-tab files, the pack…☆20Oct 17, 2018Updated 7 years ago
- ☆10Mar 7, 2023Updated 3 years ago
- COVID-19 Diagnostic Processing Dashboard☆20Jun 30, 2023Updated 2 years ago
- Miscellaneous functionality for manipulating Apache Spark RDDs.☆22Dec 29, 2018Updated 7 years ago
- Transactions, Keys, and Values☆22Nov 3, 2017Updated 8 years ago
- Exports a list of links, filtered by at least one tag, from a Pinboard account. Currently supports HTML, Markdown, Textile, MediaWiki-mar…☆16Jun 3, 2014Updated 11 years ago
- Deep Treatment Learning (R)☆17Nov 9, 2022Updated 3 years ago