bigdatagenomics / eggo
Ready-to-go Parquet-formatted public 'omics datasets
☆30Updated 9 years ago
Alternatives and similar repositories for eggo:
Users that are interested in eggo are comparing it to the libraries listed below
- A Variant Caller, Distributed. Apache 2 licensed.☆71Updated 6 years ago
- Population Stratification Analysis on Genomics Data Using Deep Learning☆26Updated 8 years ago
- Parallel Genomic Analysis Toolkit☆14Updated 6 years ago
- VariantSpark is a framework for applying Spark-based Machine Learning methods to whole-genome variant information☆33Updated 7 years ago
- Spark-based variant calling, with experimental support for multi-sample somatic calling (including RNA) and local assembly☆84Updated 7 years ago
- Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.☆40Updated 2 months ago
- This repository implements converters and tools for working with NGS data in HPC or Hadoop cluster☆17Updated 7 years ago
- Integrate the GA4GH schemas and probably a scala impl of the service.☆14Updated 8 years ago
- An example of bioinformatics and bigdata tools can playing nicely together☆14Updated 8 years ago
- New url: https://github.com/biointec/halvade☆19Updated 8 years ago
- Efficient, distributed downloads of large files from S3 to HDFS using Spark.☆17Updated 8 years ago
- Benchmarking toolkit for variant calling☆47Updated 4 years ago
- Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework☆70Updated 2 years ago
- Finding a scalable alternative to the VCF File for genomics analysis☆14Updated 8 years ago
- Analysis examples based on the ISB-CGC hosted TCGA data, using Python and IPython Notebooks.☆54Updated 5 years ago
- Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.☆40Updated last month
- Scalable RNA-seq analysis☆73Updated 4 years ago
- Load genomic BAM files using Apache Spark☆21Updated 6 years ago
- Reproducible machine learning analysis of gene expression and alternative splicing data☆126Updated 2 years ago
- DEPRECATED. Please visit our new repository (cytoscape/cyREST)☆27Updated 7 years ago
- [Historical] Reproducible Analyses for Bioinformatics☆106Updated 6 years ago
- Quality control methods for human genomic variants.☆62Updated 2 years ago
- SparkBWA is a new tool that exploits the capabilities of a Big Data technology as Apache Spark to boost the performance of one of the mos…☆69Updated 5 years ago
- A scalable genome browser. Apache 2 licensed.☆125Updated 2 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Seqnature: incorporate SNPs and Indels into a reference genome☆16Updated 8 years ago
- GenomicsDB☆111Updated 2 years ago
- BigBWA is a new tool that uses the Big Data technology Hadoop to boost the performance of the Burrows–Wheeler aligner (BWA).☆31Updated 2 years ago
- Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.☆21Updated 6 years ago
- Bioinformatics for the Scala programming language☆110Updated last year