Server component for HiGlass that manages and serves tiled data
☆21May 23, 2023Updated 3 years ago
Alternatives and similar repositories for higlass-server
Users that are interested in higlass-server are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Slides and demos from our SciPyConf 2019 talk☆13Sep 28, 2021Updated 4 years ago
- Builds a docker container wrapping higlass-server and higlass-client in nginx☆34May 31, 2022Updated 4 years ago
- Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.☆39Apr 20, 2026Updated 3 months ago
- A utility script to manage local docker instances of HiGlass☆24Jul 6, 2023Updated 3 years ago
- Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer☆66May 19, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- HiGlass track for displaying arcs between disconnected regions☆10Dec 13, 2022Updated 3 years ago
- A toolkit for analyzing architectural stripes☆23Dec 1, 2024Updated last year
- Python-based UCSC genome browser snapshot-taker and gallery-maker☆12May 21, 2024Updated 2 years ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆49Mar 26, 2025Updated last year
- Plotting average TAD heatmap for Hi-C data (give TAD segmentation and cool/hiclib interactions map).☆10Jun 5, 2021Updated 5 years ago
- convert from HDF5 matrix format to txt/tab (tsv) matrix format☆10Aug 3, 2016Updated 10 years ago
- A library to analyse the structure of 1d loops and simulate loop extrusion by loop extruding factors.☆11Feb 10, 2025Updated last year
- The tools for your .cool's☆168Mar 19, 2026Updated 4 months ago
- A cool place to store your Hi-C☆242Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A Jupyter widget for comparing two embeddings with shared labels by their confusion, neighborhoods, and size.☆51Nov 14, 2024Updated last year
- DiffDomain is a statistically sound method for detecting differential TADs between conditions☆18Jun 27, 2025Updated last year
- pycistarget is a python module to perform motif enrichment analysis in sets of regions with different tools and identify high confidence …☆20Apr 14, 2026Updated 4 months ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆22Sep 12, 2023Updated 2 years ago
- WebGL-based viewer for spatially-resolved transcriptomics data☆28Jan 6, 2023Updated 3 years ago
- User-friendly Bioinformatics Tools☆18Mar 5, 2021Updated 5 years ago
- Open Targets Genetics UI☆15Jan 31, 2025Updated last year
- ☆37Aug 24, 2025Updated 11 months ago
- Redesigning the Patient Portal Experience with SMART on FHIR.☆23Feb 3, 2026Updated 6 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Docker for 4DN Hi-C processing pipeline☆62Nov 26, 2024Updated last year
- A 3D genome data processing tutorial for ISMB/ECCB 2017☆53Jul 21, 2017Updated 9 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆29Sep 26, 2024Updated last year
- ☆11Dec 9, 2022Updated 3 years ago
- Enriched Domain Detector for ChIP-seq data☆16Aug 17, 2022Updated 3 years ago
- Enhancer-Gene Prediction Pipeline based on logistic regression and ABC model☆30Jul 14, 2026Updated last month
- Collection of Sphinx extensions similar to (but more flexible than) numpydoc☆12Updated this week
- RIESLING: Super-enhancer identification. (Rapid Identification of EnhancerS LInked to Nearby Genes)☆10Jun 28, 2018Updated 8 years ago
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Sep 25, 2019Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Fast calculations of linkage-disequilibrium in large-scale human cohorts☆44Nov 9, 2019Updated 6 years ago
- Predicting regulatory DNA elements based on epigenomic signatures☆30Jun 26, 2024Updated 2 years ago
- ☆13Aug 6, 2025Updated last year
- Prototype your Jupyter Widget in the browser with anywidget and JupyterLite 💡☆17Apr 7, 2025Updated last year
- Code for TAD_SV project☆11Mar 16, 2022Updated 4 years ago
- Tutorial on survival modeling with omics data☆12May 6, 2026Updated 3 months ago
- Blazing fast toolkit to work with .hic and .cool files☆45Updated this week