jfallmann / MONSDALinks
MONSDA, Modular Organizer of Nextflow and Snakemake driven hts Data Analysis
☆11Updated 3 weeks ago
Alternatives and similar repositories for MONSDA
Users that are interested in MONSDA are comparing it to the libraries listed below
Sorting:
- for visual evaluation of read support for structural variation☆54Updated last year
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆143Updated last week
- Just a Microbiology System (JAMS) - a suite for analyzing microbiological sequencing data for use on NIH HPC systems (Biowulf)☆23Updated this week
- Thousand Variant Callers Project Repository☆73Updated 5 years ago
- TIDDIT - structural variant calling☆76Updated 4 months ago
- Merging paired-end reads and removing adapters☆30Updated 5 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated 3 months ago
- Merging, Annotation, Validation, and Illustration of Structural variants☆75Updated 2 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆106Updated 4 years ago
- mtDNA Variant Caller☆34Updated 8 months ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆122Updated 4 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 10 months ago
- ☆49Updated 9 months ago
- ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.☆73Updated 2 months ago
- sam2pairwise takes a SAM file and uses the CIGAR and MD tag to reconstruct the pairwise alignment of each read.☆44Updated 10 years ago
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆88Updated 10 months ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- A catalogue of available long read sequencing data analysis tools☆79Updated this week
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆80Updated this week
- LoFreq Star: Sensitive variant calling from sequencing data☆107Updated 3 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆49Updated 4 years ago
- This repository hosts a large collection of Nextflow snippets☆57Updated 7 months ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆57Updated 8 years ago
- CoGe (Comparative Genomics) Platform☆44Updated 3 years ago
- De novo transcriptome assembler for short reads☆63Updated 7 years ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- My bioinfo toolbox☆50Updated 6 months ago