Emending Alignment of Spliced Transcript Reads
☆13Jan 19, 2026Updated 9 months ago
Alternatives and similar repositories for EASTR
Users that are interested in EASTR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆18Oct 12, 2025Updated last year
- ☆24Nov 9, 2017Updated 8 years ago
- An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictog…☆13Oct 16, 2026Updated 2 weeks ago
- DTU analysis tool inspired by llamas☆12Aug 19, 2026Updated 2 months ago
- A Python package with integrated lncRNA prediction methods☆13Feb 17, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated 2 years ago
- A robust Python tool for the annotation of 3’ UTRs☆25Aug 20, 2026Updated 2 months ago
- GenomeTools: Scripts and Classes for Working with Genomic Data☆12Jun 7, 2018Updated 8 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Jan 26, 2022Updated 4 years ago
- GFA visualization tool - Rust reimplementation of odgi viz☆15May 2, 2026Updated 5 months ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 3 years ago
- A graduate-level elective course: Python Programming for Life Science Students☆10Mar 26, 2026Updated 7 months ago
- Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…☆46Oct 13, 2026Updated 2 weeks ago
- Code for differential splicing comparison paper (Soneson, Matthes, et al.)☆20Jun 23, 2016Updated 10 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆12Jan 8, 2026Updated 9 months ago
- Extracting gene sets from published pathway figures☆15May 23, 2023Updated 3 years ago
- TSSr is an R/Bioconductor package for comprehensive analyses of transcription start site (TSS) data☆11Sep 21, 2026Updated last month
- Step by step tutorial for CAGE analysis☆10Sep 18, 2025Updated last year
- Repository☆10Oct 23, 2024Updated 2 years ago
- GCLib - Genomic C++ library of reusable code for bioinformatics projects☆40Updated this week
- This is something I have decided to do to make something good come out of the current covid situation. Here I will put the publicly avail…☆12Sep 6, 2021Updated 5 years ago
- Tools to explore Minimum Decycling Sets (MDSs) of the de Bruijn graph☆12Sep 11, 2025Updated last year
- online variation graph induction☆12Oct 21, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆10Apr 10, 2016Updated 10 years ago
- high-performance BED-to-GTF converter written in Rust☆21Aug 9, 2026Updated 2 months ago
- Statistical Rethinking Course 2024 with Python☆10Jan 7, 2024Updated 2 years ago
- Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS☆10Jul 20, 2017Updated 9 years ago
- lncRNA-Py is a development package for applying machine learning and deep learning to the problem of lncRNA classification, i.e. predicti…☆12Jan 24, 2025Updated last year
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- Comprehensive Human Expressed SequenceS☆20Jul 13, 2025Updated last year
- A machine learning model for the prediction of lncRNAs (Singh et. al NAR 2017)☆11Jan 19, 2022Updated 4 years ago
- PhenomeXcan: mapping the genome to the phenome through the transcriptome☆11Jun 28, 2020Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A software suite for accurate identification, annotation, translation, and feature characterization of annotate transcripts.☆24Sep 1, 2021Updated 5 years ago
- A collection of python and bash scripts for various bioinformatics-related tasks☆13Sep 19, 2024Updated 2 years ago
- Generating UTRs from SHort Reads☆12Sep 28, 2020Updated 6 years ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Sep 7, 2026Updated last month
- Westlake BioBank for Chinese pilot project☆10May 17, 2023Updated 3 years ago
- Notes by Markdown in HZAU Bioinformatics Courses☆15Dec 16, 2025Updated 10 months ago
- ☆10May 17, 2022Updated 4 years ago