TOGA2: A faster, more versatile successor of Tool to infer Orthologs from Genome Alignments
☆50Aug 5, 2026Updated this week
Alternatives and similar repositories for TOGA2
Users that are interested in TOGA2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- high-performance BED-to-GTF converter written in Rust☆21Updated this week
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆35Jul 30, 2026Updated last week
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆210Nov 23, 2025Updated 8 months ago
- ☆156Jul 23, 2026Updated 2 weeks ago
- ☆28Jul 18, 2026Updated 3 weeks ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- OpenGL Powered Pretext Contact Map Viewer☆63Jul 17, 2026Updated 3 weeks ago
- Gene Ontology (GO) enrichment analysis☆12Aug 7, 2023Updated 3 years ago
- flexible pipelines for scalable secretome prediction, R package☆12Feb 21, 2019Updated 7 years ago
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆24Mar 26, 2026Updated 4 months ago
- Invertory of TE-gene isoforms☆14Sep 18, 2023Updated 2 years ago
- Infering ancestral synteny with hierarchical orthologous groups☆38Jun 26, 2026Updated last month
- An integrative pipeline for family-level super-pangenome analysis across coding and noncoding sequences.☆21Apr 13, 2026Updated 3 months ago
- TransAnnot - a fast transcriptome annotation pipeline☆20Jan 22, 2025Updated last year
- Nextflow DSL2 pipeline to generate data for a BlobToolKit analysis. This workflow is part of the Tree of Life production suite.☆17Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A tutorial on how to annotate and interpret novel mammalian reference genomes☆29Updated this week
- ☆16Jun 28, 2026Updated last month
- Generation of OrthoDB protein sets for gene prediction experiments☆11Aug 8, 2024Updated 2 years ago
- Using de-novo assembly and read-phasing to assemble reference-free diploid genomes☆23Mar 26, 2026Updated 4 months ago
- A Nextflow pipeline for genome and pan-genome annotation☆16Feb 22, 2026Updated 5 months ago
- OMAmer - tree-driven and alignment-free protein assignment to sub-families☆23Updated this week
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Dec 7, 2022Updated 3 years ago
- Python package for comparing genome assemblies and read data to the diploid Q100 benchmark☆17Updated this week
- Interspecies Point Projection - A tool for comparative genomics beyond alignable sequence☆29Apr 16, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆16Apr 25, 2019Updated 7 years ago
- Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.☆28Jul 15, 2026Updated 3 weeks ago
- kmerfreq count K-mer (with size K) frequency from the input sequence data, typically sequencing reads data, and refe rence genome data is…☆20Mar 30, 2020Updated 6 years ago
- Any Way to Show Multi genomic Synteny☆231Jul 4, 2025Updated last year
- Tool to flag foldback and chimeric artifacts in long-read sequence alignment files☆43Jul 1, 2026Updated last month
- RPHAST: Phylogenetic Analysis with Space/Time Models in R☆13Nov 25, 2024Updated last year
- source code for EVM☆126Nov 29, 2024Updated last year
- Genome-in-a-Bottle stratifications for major references☆15Apr 28, 2025Updated last year
- ☆12Feb 16, 2026Updated 5 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- PhyloAcc a software to detect the changes of conservation of a genomic region☆38May 11, 2026Updated 2 months ago
- Earl Grey: A fully automated TE curation and annotation pipeline☆221Jul 23, 2026Updated 2 weeks ago
- EM-PCA for Ultra-low Coverage Sequencing Data☆19Dec 18, 2025Updated 7 months ago
- Genome alignment and synteny plots☆36Mar 24, 2026Updated 4 months ago
- ☆63Sep 15, 2025Updated 10 months ago
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated 2 years ago
- Centromics: visualing centromeres with multiple omics data☆21Jan 18, 2024Updated 2 years ago