MinchaoFang / HalluDesignLinks
HalluDesign, a hallucination-driven all-atom framework for the iterative co-optimization and co-design of protein sequences and structures by leveraging the forward pass of a structure prediction model
☆60Updated last week
Alternatives and similar repositories for HalluDesign
Users that are interested in HalluDesign are comparing it to the libraries listed below
Sorting:
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆69Updated 6 months ago
- Repo of AntiBMPNN project for antibody sequence design.☆24Updated 7 months ago
- Making Protein folding accessible to all!☆25Updated 2 years ago
- ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.☆68Updated last month
- ☆22Updated last year
- PPI version of Pythia☆26Updated 4 months ago
- ☆43Updated 9 months ago
- ☆29Updated 3 months ago
- Extension of ThermoMPNN for double mutant predictions☆51Updated 3 months ago
- code for IDR binding paper 2025☆65Updated 11 months ago
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆32Updated last year
- ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN☆22Updated 10 months ago
- ☆61Updated last year
- ESMDynamic repo☆22Updated last month
- ☆46Updated last year
- ☆15Updated last year
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆46Updated 2 months ago
- bakerlab pymol scripts☆25Updated 5 years ago
- ML-optimized library design with improved fitness and diversity for protein engineering☆36Updated 2 months ago
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆86Updated last month
- ☆54Updated last month
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆42Updated last year
- ☆25Updated 7 months ago
- 📈 Fusion of sequence, structure and feature information to improve protein solubility prediction (IEEE BIBM 2024).☆24Updated 8 months ago
- BindCraft modified to make PyRosetta use and installation optional: no license needed☆116Updated last month
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆80Updated 5 months ago
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆56Updated 6 months ago
- ☆19Updated last month
- ☆72Updated 9 months ago
- A command-line interface and Python library for generating AlphaFold3 input files.☆38Updated 2 weeks ago