Alternatives and similar repositories for PXDesignBench

Users that are interested in PXDesignBench are comparing it to the libraries listed below

• zhanghaicang / carbonmatrix_public
  ☆119Updated last week
• liuyf020419 / SCUBA-D
  ☆61Updated last year
• richardshuai / fampnn
  Sidechain conditioning and modeling for full-atom protein sequence design
  ☆131Updated last month
• Mingchenchen / AF3Score
  A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation
  ☆80Updated 4 months ago
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆86Updated last month
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆68Updated 4 months ago
• TencentAI4S / IgGM
  Official Implementation of IgGM
  ☆176Updated last month
• YuzheWangPKU / DiffPepBuilder
  Official repository for DiffPepBuilder and DiffPepDock tools
  ☆113Updated 2 months ago
• levinthal / Pallatom
  ☆132Updated 7 months ago
• Kuhlman-Lab / evopro
  ☆93Updated 2 months ago
• yehlincho / BoltzDesign1
  ☆235Updated 4 months ago
• WillHua127 / GENzyme
  Official repository of GENzyme
  ☆60Updated last year
• ai4protein / Pro-Prime
  ☆76Updated 4 months ago
• The-Institute-for-AI-Molecular-Design / ODesign
  Official repository of "ODesign: A World Model for Biomolecular Interaction Design"
  ☆191Updated last week
• ai4protein / VenusFSFP
  VenusFSFP: Few-Shot Protein Fitness Prediction
  ☆103Updated last month
• Gonglab-THU / SPIRED-Fitness
  ☆46Updated 7 months ago
• programmablebio / pepmlm
  Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling
  ☆108Updated 2 months ago
• westlake-repl / Denovo-Pinal
  Text-guided protein design
  ☆90Updated last month
• bytedance / PXDesign
  Official repository of PXDesign
  ☆133Updated last week
• Profluent-AI / E1
  Profluent-E1 family of Protein Encoder Models
  ☆97Updated last month
• bytedance / Protenix-Dock
  An accurate and trainable end-to-end protein-ligand docking framework
  ☆119Updated 9 months ago
• AstraZeneca / DiffAbXL
  The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…
  ☆91Updated 7 months ago
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆60Updated 2 years ago
• TencentAI4S / tfold
  open source code for Tencent tFold
  ☆137Updated 9 months ago
• wenjiegroup / ProMEP
  Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning
  ☆68Updated 4 months ago
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆69Updated 6 months ago
• Gonglab-THU / GeoStab
  ☆39Updated last year
• blt2114 / MotifBench
  A standardized protein design benchmark for motif-scaffolding problems
  ☆72Updated 3 weeks ago
• IntelliGen-AI / IntelliFold
  IntelliFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction.
  ☆157Updated 5 months ago
• Hong-yu-Zhang / OmniESI
  The official code repository of "OmniESI: A unified framework for enzyme-substrate interaction prediction with progressive conditional de…
  ☆26Updated 4 months ago