umerijaz / TAXAassign
Pipeline to annotate sequences at different taxonomic levels using NCBI's taxonomy
☆19Updated 11 years ago
Alternatives and similar repositories for TAXAassign:
Users that are interested in TAXAassign are comparing it to the libraries listed below
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- ☆52Updated 3 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆23Updated last week
- Metagenomic binning suite☆29Updated 2 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- Estimate metagenomic coverage and sequence diversity☆48Updated 8 months ago
- Workflows for metagenomic sequence data processing and analysis.☆17Updated 5 years ago
- The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline☆38Updated 2 years ago
- ☆23Updated 6 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- StrainFinder☆26Updated 6 years ago
- Automatically exported from code.google.com/p/prottest3☆36Updated 7 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- Calculates the lowest common ancestors of each query sequence in a Blast result☆31Updated 7 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆56Updated 2 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆41Updated 4 years ago
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- MIRA sequence assembler☆28Updated 3 months ago
- Analysing Metagenomic Species (MGS)☆41Updated 4 years ago
- Pangenome analysis of eukaryotes.☆18Updated 4 years ago
- Documentation for Evolview☆26Updated 3 years ago
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- Calculate Average Nucleotide Identity (ANI) for prokaryotic genomes☆19Updated 3 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆28Updated 2 months ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆45Updated 2 years ago