umerijaz / TAXAassignLinks
Pipeline to annotate sequences at different taxonomic levels using NCBI's taxonomy
☆19Updated 11 years ago
Alternatives and similar repositories for TAXAassign
Users that are interested in TAXAassign are comparing it to the libraries listed below
Sorting:
- ☆52Updated 4 years ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- Calculates the lowest common ancestors of each query sequence in a Blast result☆31Updated 7 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆54Updated 2 months ago
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆23Updated last month
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- Estimate metagenomic coverage and sequence diversity☆54Updated 10 months ago
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 2 years ago
- A tool for removing redundant genomes from a set of assemblies☆71Updated last year
- Workflows for metagenomic sequence data processing and analysis.☆17Updated 5 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- tools for assessing the accuracy of genome assemblies☆34Updated last year
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Calculate Average Nucleotide Identity (ANI) for prokaryotic genomes☆19Updated 3 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆30Updated 5 months ago
- ☆82Updated last year
- Strain Prediction and Analysis with Representative SEquence☆19Updated 6 months ago
- StrainFinder☆27Updated 6 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- reference-based long read assemblies of bacterial genomes☆49Updated 3 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆59Updated 4 years ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago
- ☆35Updated last year
- OPAL: Open-community Profiling Assessment tooL☆28Updated 5 months ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆39Updated this week