Formalizing and benchmarking open problems in single-cell genomics
☆56Jun 11, 2025Updated last year
Alternatives and similar repositories for openproblems-v2
Users that are interested in openproblems-v2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Interactive single cell RNA-seq analysis webserver!☆10Mar 15, 2023Updated 3 years ago
- ☆35Updated this week
- Formalizing and benchmarking open problems in single-cell genomics☆436Updated this week
- A Python toolkit for setting up benchmarking dataset using biomedical networks☆22Updated this week
- Visualising data frames as funky heatmaps 📊☆201Dec 12, 2025Updated 8 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆19Feb 9, 2022Updated 4 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆22May 27, 2026Updated 2 months ago
- script + metadata = standalone component☆46Jul 31, 2026Updated 2 weeks ago
- An eXplainable Cell-specific machine learning method to predict clinical Phenotypes using single-cell multi-omics☆17Sep 23, 2025Updated 10 months ago
- ☆19Nov 30, 2021Updated 4 years ago
- Single-cell Analysis of Perturbational Effects using Machine Learning☆20Oct 9, 2025Updated 10 months ago
- Module to detect mesoscale structures (community, core-periphery, bipartite) on Graphs and Multigraphs using surprise.☆17Jan 24, 2022Updated 4 years ago
- ☆19Mar 31, 2023Updated 3 years ago
- A benchmark on predicting how small molecules change gene expression in different cell types.☆18Jul 4, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆21Updated this week
- ☆15Jul 24, 2024Updated 2 years ago
- ☆26Oct 23, 2024Updated last year
- Python implementations for Sparse CCA☆21Feb 24, 2023Updated 3 years ago
- Epigenomics Program pipeline to analyze SHARE-seq data.☆23Mar 30, 2025Updated last year
- popsicleR, a flexible R package aimed at providing most of the necessary quality controls and preliminary information for complete and de…☆25Dec 3, 2025Updated 8 months ago
- Locate transgenic insertion sites☆11Mar 14, 2023Updated 3 years ago
- The computational and statistical analyses of TenK10K phase 1 multiome data☆18May 12, 2026Updated 3 months ago
- ☆14Oct 9, 2025Updated 10 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Winter 2021, GGG 298 - Tools for Data Intensive Research - UC Davis☆12Mar 10, 2021Updated 5 years ago
- ☆12Oct 4, 2021Updated 4 years ago
- ☆18May 15, 2026Updated 3 months ago
- GWAS and rare variants tests at high speed using regenie☆16Jul 30, 2026Updated 2 weeks ago
- ☆29Mar 16, 2023Updated 3 years ago
- ☆62Apr 5, 2024Updated 2 years ago
- Additional code and analysis from the single-cell integration benchmarking project☆74Dec 19, 2022Updated 3 years ago
- Pipeline to analyse ChIP-Rx data, i.e ChIP-Seq with reference exogenous genome spike-in normalization☆14Apr 11, 2026Updated 4 months ago
- Fit generalized linear models in python.☆28Mar 6, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- An interface for Nested Stochastic Block Model for single cell analysis☆39Updated this week
- A Bioconductor R package for detecting cell-to-cell variably methylated regions (VMRs) from single-cell bisulfite sequencing leveraging p…☆11Jul 13, 2025Updated last year
- muon is a multimodal omics Python framework☆279Updated this week
- A probabilistic cell typing algorithm for spatial transcriptomics.☆26Jun 24, 2026Updated last month
- Repository for the HPC & Data Science Summer Institute 2024☆12Mar 7, 2025Updated last year
- Investigating the role of pre-training dataset size and diversity on the performance of single-cell foundation models☆20May 12, 2026Updated 3 months ago
- Annotated data.☆766Updated this week