Formalizing and benchmarking open problems in single-cell genomics
☆56Jun 11, 2025Updated 11 months ago
Alternatives and similar repositories for openproblems-v2
Users that are interested in openproblems-v2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆35May 20, 2026Updated last week
- Interactive single cell RNA-seq analysis webserver!☆10Mar 15, 2023Updated 3 years ago
- Formalizing and benchmarking open problems in single-cell genomics☆431May 7, 2026Updated 2 weeks ago
- script + metadata = standalone component☆45May 13, 2026Updated last week
- Visualising data frames as funky heatmaps 📊☆198Dec 12, 2025Updated 5 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A Python toolkit for setting up benchmarking dataset using biomedical networks☆21May 18, 2026Updated last week
- Flexible, probablistic metrics for quality control of scRNA-seq data☆21Jan 4, 2023Updated 3 years ago
- ☆19Nov 30, 2021Updated 4 years ago
- Module to detect mesoscale structures (community, core-periphery, bipartite) on Graphs and Multigraphs using surprise.☆17Jan 24, 2022Updated 4 years ago
- ☆19Mar 31, 2023Updated 3 years ago
- STAgent is a multimodal LLM-based AI agent that enables deep research about spatial transcriptomics data☆53Mar 22, 2026Updated 2 months ago
- ☆27Oct 23, 2024Updated last year
- Python implementations for Sparse CCA☆21Feb 24, 2023Updated 3 years ago
- ☆15Jul 24, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- The Agentic BioML Challenge + AutoBioML framework☆18Jun 3, 2025Updated 11 months ago
- popsicleR, a flexible R package aimed at providing most of the necessary quality controls and preliminary information for complete and de…☆25Dec 3, 2025Updated 5 months ago
- ☆14Oct 9, 2025Updated 7 months ago
- A benchmark on predicting how small molecules change gene expression in different cell types.☆18Jul 4, 2025Updated 10 months ago
- Epigenomics Program pipeline to analyze SHARE-seq data.☆23Mar 30, 2025Updated last year
- Winter 2021, GGG 298 - Tools for Data Intensive Research - UC Davis☆12Mar 10, 2021Updated 5 years ago
- ☆12Oct 4, 2021Updated 4 years ago
- Locate transgenic insertion sites☆11Mar 14, 2023Updated 3 years ago
- ☆13Nov 7, 2025Updated 6 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- GWAS and rare variants tests at high speed using regenie☆16Feb 18, 2026Updated 3 months ago
- Additional code and analysis from the single-cell integration benchmarking project☆72Dec 19, 2022Updated 3 years ago
- A probabilistic cell typing algorithm for spatial transcriptomics.☆26Nov 6, 2025Updated 6 months ago
- ☆29Mar 16, 2023Updated 3 years ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆82Jan 23, 2025Updated last year
- ☆62Apr 5, 2024Updated 2 years ago
- Pipeline to analyse ChIP-Rx data, i.e ChIP-Seq with reference exogenous genome spike-in normalization☆14Apr 11, 2026Updated last month
- A Bioconductor R package for detecting cell-to-cell variably methylated regions (VMRs) from single-cell bisulfite sequencing leveraging p…☆10Jul 13, 2025Updated 10 months ago
- Fit generalized linear models in python.☆28Mar 6, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- An interface for Nested Stochastic Block Model for single cell analysis☆37May 13, 2026Updated last week
- muon is a multimodal omics Python framework☆268May 8, 2026Updated 2 weeks ago
- R/Bioconductor package including the Gene Expression Signature Search (GESS), Function Enrichment Analysis (FEA) methods and supporting d…☆23Mar 22, 2026Updated 2 months ago
- Workflow for Sequenza, cellularity and ploidy☆28Aug 19, 2025Updated 9 months ago
- Analysis steps to calculate RNA Velocity in Bulk RNA-Seq samples. Step by Step Guide.☆17Jan 7, 2020Updated 6 years ago
- Weakly supervised learning uncovers phenotypic signatures in single-cell data☆40Dec 17, 2025Updated 5 months ago
- Reproducible GSEA Benchmarking☆14May 14, 2026Updated last week