anton-bushuiev / PPIRef
Dataset and package for working with protein-protein interactions in 3D
☆91Updated last month
Alternatives and similar repositories for PPIRef:
Users that are interested in PPIRef are comparing it to the libraries listed below
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆106Updated last week
- PINDER: The Protein INteraction Dataset and Evaluation Resource☆109Updated 4 months ago
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆47Updated 2 months ago
- ☆83Updated 5 months ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆67Updated 5 months ago
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆112Updated 3 months ago
- MaSIF-neosurf: surface-based protein design for ternary complexes.☆103Updated this week
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆102Updated 3 weeks ago
- Masif seed paper repository☆146Updated last year
- Official repository of EnzymeFlow☆82Updated 3 months ago
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆90Updated 7 months ago
- Antibody-Antigen Docking and Affinity Benchmark☆70Updated 4 years ago
- Improved antibody structure-based design using inverse folding☆99Updated last week
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆69Updated 11 months ago
- Fitness landscapes for antibodies☆66Updated 2 months ago
- ☆105Updated last year
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆97Updated 5 months ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆83Updated 3 weeks ago
- Protein-ligand structure prediction☆212Updated 7 months ago
- ☆100Updated 2 years ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆57Updated last year
- ☆88Updated 4 months ago
- PocketGen (Nature Machine Intelligence 24): Generating Full-Atom Ligand-Binding Protein Pockets☆173Updated 2 weeks ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆73Updated 9 months ago
- Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling☆48Updated 7 months ago
- ☆111Updated last week
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆152Updated last month
- A compilation of deep learning methods for protein design☆97Updated 2 years ago
- Diffusion-based all-atom protein generative model.☆183Updated last month
- Geometric deep learning method to predict protein binding interfaces from a protein structure.☆123Updated last year