anton-bushuiev / PPIRef
Dataset and package for working with protein-protein interactions in 3D
☆84Updated 3 weeks ago
Related projects ⓘ
Alternatives and complementary repositories for PPIRef
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆44Updated 3 weeks ago
- PINDER: The Protein INteraction Dataset and Evaluation Resource☆92Updated last week
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆84Updated 3 months ago
- PocketGen (Nature Machine Intelligence 24): Generating Full-Atom Ligand-Binding Protein Pockets☆103Updated this week
- Masif seed paper repository☆137Updated last year
- Protein Ligand INteraction Dataset and Evaluation Resource☆165Updated this week
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. https…☆82Updated last month
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆125Updated 2 months ago
- ☆75Updated last month
- Geometric deep learning method to predict protein binding interfaces from a protein structure.☆108Updated last year
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆82Updated 2 weeks ago
- Protein-ligand structure prediction☆205Updated 3 months ago
- ☆95Updated last year
- Protein structure diffusion model for unconditional protein generation and motif scaffolding☆124Updated 4 months ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆51Updated last year
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆135Updated 2 months ago
- ☆94Updated last month
- Comprehensive benchmarking of protein-ligand structure generation methods (ICML 2024 AI4Science)☆85Updated this week
- A compilation of deep learning methods for protein design☆94Updated 2 years ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆70Updated 4 months ago
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆93Updated 7 months ago
- repo for DynamicBind: Predicting ligand-specific protein-ligand complex structure with a deep equivariant generative model☆199Updated 6 months ago
- Diffusion model based protein-ligand flexible docking method☆91Updated 3 weeks ago
- ☆66Updated last year
- Antibody-Antigen Docking and Affinity Benchmark☆66Updated 4 years ago
- ☆77Updated 8 months ago
- ☆70Updated 6 months ago
- Improved antibody structure-based design using inverse folding☆75Updated 2 months ago
- Official repository of EnzymeFlow☆59Updated last week
- open source code for Tencent tFold☆68Updated 6 months ago