An all-atom protein structure dataset for machine learning.
☆365Mar 16, 2024Updated 2 years ago
Alternatives and similar repositories for sidechainnet
Users that are interested in sidechainnet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ATOM3D: tasks on molecules in three dimensions☆319Mar 2, 2023Updated 3 years ago
- Standardized data set for machine learning of protein structure☆919Nov 18, 2020Updated 5 years ago
- Protein Graph Library☆1,198Updated this week
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆279Apr 27, 2025Updated last year
- Listing of papers about machine learning for proteins.☆1,719May 31, 2024Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- OmegaFold Release Code☆630Dec 12, 2022Updated 3 years ago
- Diffusion models of protein structure; trigonometry and attention are all you need!☆568Sep 9, 2026Updated last month
- Implementation for SE(3) diffusion model with application to protein backbone generation☆426Jul 3, 2023Updated 3 years ago
- A package to predict protein inter-residue geometries from sequence data☆221Sep 27, 2021Updated 5 years ago
- Generative Models for Graph-Based Protein Design☆292Dec 24, 2020Updated 5 years ago
- An open-source platform for developing protein models beyond AlphaFold.☆425Jun 26, 2024Updated 2 years ago
- Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2☆3,443Dec 16, 2025Updated 10 months ago
- End-To-End Molecular Dynamics (MD) Engine using PyTorch☆721Apr 21, 2026Updated 6 months ago
- Diffusion-based all-atom protein generative model.☆239Aug 27, 2025Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Fast protein backbone generation with SE(3) flow matching.☆329Jul 19, 2024Updated 2 years ago
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆90Apr 21, 2026Updated 6 months ago
- code for the SE3 Transformers paper: https://arxiv.org/abs/2006.10503☆585Apr 3, 2026Updated 6 months ago
- A Python Package for Protein Dynamics Analysis☆560Oct 4, 2026Updated 3 weeks ago
- Versatile computational pipeline for processing protein structure data for deep learning applications.☆283Feb 14, 2024Updated 2 years ago
- OpenMM plugin to define forces with neural networks☆220Jun 24, 2026Updated 4 months ago
- Implementation of Invariant Point Attention, used for coordinate refinement in the structure module of Alphafold2, as a standalone Pytorc…☆173Nov 25, 2022Updated 3 years ago
- Repository for publicly available deep learning models developed in Rosetta community☆123Sep 18, 2021Updated 5 years ago
- Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequ…☆89Jul 25, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆745Dec 11, 2022Updated 3 years ago
- AlphaFold Meets Flow Matching for Generating Protein Ensembles☆548Mar 22, 2026Updated 7 months ago
- ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…☆1,324May 22, 2025Updated last year
- A framework for rapidly mining structural information from the Protein Data Bank☆53Jun 2, 2020Updated 6 years ago
- Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm☆413Sep 6, 2026Updated last month
- To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released☆1,641Oct 29, 2022Updated 4 years ago
- A Python API for the RCSB Protein Data Bank (PDB)☆339Aug 1, 2026Updated 2 months ago
- A collection of *fold* tools☆303Aug 8, 2025Updated last year
- EquiBind: geometric deep learning for fast predictions of the 3D structure in which a small molecule binds to a protein☆553Feb 19, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Making Protein Design accessible to all via Google Colab!☆948Oct 14, 2026Updated 2 weeks ago
- Energy-based models for atomic-resolution protein conformations☆105Mar 22, 2022Updated 4 years ago
- ☆214Apr 21, 2025Updated last year
- Geometric Vector Perceptron --- a rotation-equivariant GNN for learning from biomolecular structure☆164May 1, 2021Updated 5 years ago
- Note that current version does not include search of very large metagenome data. For some proteins, metagenome data is important. We will…☆100Jan 26, 2022Updated 4 years ago
- The official implementation of the ICLR'23 paper PiFold: Toward effective and efficient protein inverse folding.☆183Jun 17, 2023Updated 3 years ago
- Geometric Vector Perceptrons --- a rotation-equivariant GNN for learning from biomolecular structure☆329Nov 15, 2025Updated 11 months ago