A curated list of awesome Bioinformatics software, tools and resources
☆32May 28, 2026Updated 3 weeks ago
Alternatives and similar repositories for awesome-bioinformatics-tools
Users that are interested in awesome-bioinformatics-tools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Analyzer of Gene and Species Trees☆11Aug 8, 2016Updated 9 years ago
- Download NCBI assembly genomes with ftp. rsync, ascp☆12Aug 2, 2022Updated 3 years ago
- Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3☆37Aug 30, 2022Updated 3 years ago
- NCBI download and Orthofinder analysis☆13Jun 17, 2022Updated 4 years ago
- Estimating gene family turnover rates by likelihood-based methods☆12Aug 17, 2020Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Drawing reconciled phylogenetic trees allowing 1, 2 or 3 reconcillation levels☆25Oct 24, 2025Updated 7 months ago
- A placeholder for all my random scripts. Some scripts might eventually graduate and go to their own projects, so don't be surprised if a…☆17Nov 24, 2025Updated 6 months ago
- Code repository for the Global Ant Genomics Alliance☆18Jun 16, 2025Updated last year
- MegaSSR is a robust online server that identifies Simple Sequence Repeats (SSR) and enables the design of SSR markers in high-throughput …☆11Nov 25, 2024Updated last year
- 二代测序数据分析☆378Dec 6, 2023Updated 2 years ago
- A software package for detection of copy number alterations from tumor samples☆12May 8, 2015Updated 11 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Feb 3, 2023Updated 3 years ago
- ☆81May 2, 2026Updated last month
- This repository contains R code for building a heatmap and histogram with the output of FastANI☆18Sep 14, 2021Updated 4 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆22May 3, 2025Updated last year
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Aug 13, 2020Updated 5 years ago
- ✨ smplot2 - An R package for plotting standalone and composite figures☆27Feb 3, 2025Updated last year
- Scripts and tutorials on how to assemble individual microbial genomes from metagenomes☆80Jun 14, 2016Updated 10 years ago
- Correction of palindromes in long reads from PacBio and Nanopore☆14Mar 1, 2022Updated 4 years ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆112May 23, 2026Updated 3 weeks ago
- An Interactive Desktop Platform for Drawing Gene Structure and Protein Architecture☆23Aug 8, 2025Updated 10 months ago
- Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshift☆19Sep 30, 2024Updated last year
- GenomeThreader gene prediction software.☆14Nov 10, 2025Updated 7 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Build a map of genes present across a set of microbial genomes☆18Jan 23, 2026Updated 4 months ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Oct 20, 2023Updated 2 years ago
- NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.☆28May 15, 2026Updated last month
- Select primer sets for selective whole genome amplification (SWGA)☆33Mar 26, 2019Updated 7 years ago
- A simple tool to calculate reads number and total base count in FASTQ file☆21Mar 8, 2019Updated 7 years ago
- ☆27May 25, 2025Updated last year
- GeneMiner: a tool for extracting phylogenetic markers from next-generation sequencing data☆12Feb 22, 2024Updated 2 years ago
- ggDoubleHeat: A heatmap-like visualization tool☆16Sep 12, 2025Updated 9 months ago
- emapper-utils: utils for parse emapper result☆10Sep 22, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A curated list of awesome Bioinformatics databases, softwares, libraries, toolboxes, pipelines, books, courses, tutorials and more.☆45Sep 2, 2021Updated 4 years ago
- We report a section-wide NLRome for the tuber-bearing section Petota, including the most important non-cereal food crop potato. Evolution…☆22Oct 31, 2025Updated 7 months ago
- Perform taxonomic profiling analyses for long-read shotgun metagenomic datasets. Developed for the Long Read Sequencing Workshop 2022 at …☆13May 12, 2022Updated 4 years ago
- Phylommand is a software package to create, manipulate, and/or analyze phylogenetic trees or pairwise alignments.☆11Sep 5, 2024Updated last year
- Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.☆28Apr 28, 2025Updated last year
- R code for writing Beast2 XML (especially morphology/tip-dating)☆11Jun 26, 2024Updated last year
- A pipeline for lightweight screening of Eukaryotic genomes and transcriptomes for recent HGT☆14Aug 26, 2025Updated 9 months ago