A curated list of awesome Bioinformatics software, tools and resources
☆31Sep 3, 2026Updated last month
Alternatives and similar repositories for awesome-bioinformatics-tools
Users that are interested in awesome-bioinformatics-tools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Analyzer of Gene and Species Trees☆11Aug 8, 2016Updated 10 years ago
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆14Oct 21, 2021Updated 5 years ago
- Download NCBI assembly genomes with ftp. rsync, ascp☆12Aug 2, 2022Updated 4 years ago
- Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3☆37Aug 30, 2022Updated 4 years ago
- ☆11Jun 2, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- NCBI download and Orthofinder analysis☆13Jun 17, 2022Updated 4 years ago
- Drawing reconciled phylogenetic trees allowing 1, 2 or 3 reconcillation levels☆25Oct 24, 2025Updated 11 months ago
- 二代测序数据分析☆378Dec 6, 2023Updated 2 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆20Feb 3, 2023Updated 3 years ago
- A software package for detection of copy number alterations from tumor samples☆12May 8, 2015Updated 11 years ago
- NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.☆29May 15, 2026Updated 5 months ago
- ☆82May 2, 2026Updated 5 months ago
- Correction of palindromes in long reads from PacBio and Nanopore☆14Mar 1, 2022Updated 4 years ago
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆22May 3, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Aug 13, 2020Updated 6 years ago
- Hypervariable region primer-based extractor for 16S rRNA and other SSU/LSU sequences.☆10Jul 23, 2026Updated 3 months ago
- GenomeThreader gene prediction software.☆14Nov 10, 2025Updated 11 months ago
- Scripts and tutorials on how to assemble individual microbial genomes from metagenomes☆80Jun 14, 2016Updated 10 years ago
- GeneMiner: a tool for extracting phylogenetic markers from next-generation sequencing data☆11Feb 22, 2024Updated 2 years ago
- Code repository for the Global Ant Genomics Alliance☆18Jun 16, 2025Updated last year
- This repository contains R code for building a heatmap and histogram with the output of FastANI☆18Sep 14, 2021Updated 5 years ago
- My published program for estimating the population recombination rate.☆11Apr 21, 2017Updated 9 years ago
- Comprehensive benchmark of structural variant callers☆49Feb 4, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Select primer sets for selective whole genome amplification (SWGA)☆33Mar 26, 2019Updated 7 years ago
- Build a map of genes present across a set of microbial genomes☆18Jan 23, 2026Updated 9 months ago
- A simple tool to calculate reads number and total base count in FASTQ file☆21Mar 8, 2019Updated 7 years ago
- Assembly chloroplast genome and validate conformation☆15May 21, 2024Updated 2 years ago
- How to fill gaps in genome of soybean☆12May 24, 2023Updated 3 years ago
- Find housekeeping genes in prokaryotic (meta)genomic data☆11Feb 19, 2026Updated 8 months ago
- emapper-utils: utils for parse emapper result☆10Sep 22, 2020Updated 6 years ago
- Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshift☆19Sep 30, 2024Updated 2 years ago
- ☆16Jan 15, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Scotch pipeline for indel calling.☆10Nov 25, 2019Updated 6 years ago
- A pipeline for lightweight screening of Eukaryotic genomes and transcriptomes for recent HGT☆14Aug 26, 2025Updated last year
- Paquete de R con herramientas para facilitar el proceso de acreditación en la ANECA☆22Mar 31, 2025Updated last year
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Oct 20, 2023Updated 3 years ago
- Chromosome Scale Assembler: A high-throughput chromosome scale genome assembly pipeline for vertebrate genomes☆10Oct 16, 2024Updated 2 years ago
- Synteny matrix representation with maximum likelihood pipeline☆17Jul 7, 2021Updated 5 years ago
- Data Analysis For FLAM-Seq Third Generation RNA Sequencing☆10Jan 22, 2022Updated 4 years ago