Hypervariable region primer-based extractor for 16S rRNA and other SSU/LSU sequences.
☆10Jul 23, 2026Updated 2 months ago
Alternatives and similar repositories for hyperex
Users that are interested in hyperex are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- NCBI Taxonomy History Browser☆10May 7, 2026Updated 5 months ago
- Metagenomics calibration R package☆21Feb 15, 2022Updated 4 years ago
- DFAST Quality Control: Taxonomy and completeness check☆19Jun 17, 2026Updated 4 months ago
- finding conserved regions in highly diverse genomes☆16May 25, 2026Updated 4 months ago
- a collection of scripts for organising bacterial genomes by species☆79Mar 18, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆11Feb 21, 2020Updated 6 years ago
- Analysis tool for Nanopore sequencing data☆11Apr 26, 2024Updated 2 years ago
- ☆14Jul 12, 2022Updated 4 years ago
- This repository releases the model weights of ANNA16, an end-to-end tool that predicts 16S rRNA gene copy number (GCN) from 16S rRNA sequ…☆12Updated this week
- Subset of fast5 files contained in a fastq, BAM, or SAM file.☆12Mar 29, 2023Updated 3 years ago
- Perform taxonomic profiling analyses for long-read shotgun metagenomic datasets. Developed for the Long Read Sequencing Workshop 2022 at …☆13May 12, 2022Updated 4 years ago
- Creates a simple OTU table from Kraken2 report.☆13Oct 15, 2024Updated 2 years ago
- A pipeline for lightweight screening of Eukaryotic genomes and transcriptomes for recent HGT☆14Aug 26, 2025Updated last year
- a Contig Alignment Tool for Pairwise Assembly Comparison☆12Dec 11, 2019Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- GenePiper☆12Mar 13, 2022Updated 4 years ago
- ☆10Jan 8, 2024Updated 2 years ago
- The shiny app that accompanies the ngsReports R package☆14Jun 10, 2021Updated 5 years ago
- C++ tools for NCBI taxonomy tasks☆12Jun 26, 2025Updated last year
- Hierarchical genome assembly: de novo bacterial genome assembly using high coverage short sequencing reads☆11Dec 27, 2016Updated 9 years ago
- An R Package for Integrated Analysis and Visualization of Microbiome Data☆19Oct 8, 2026Updated last week
- ☆15Dec 16, 2021Updated 4 years ago
- A Survey of Canteen Desserts at Institut Pasteur☆12Nov 18, 2022Updated 3 years ago
- sunburst plots for taxonomy - working to update Krona☆48Sep 22, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆10Jul 23, 2020Updated 6 years ago
- ☆16Sep 28, 2026Updated 3 weeks ago
- Resolving Species Level Classification Using Emu☆14Jun 14, 2024Updated 2 years ago
- ☆11Sep 16, 2020Updated 6 years ago
- ☆10Mar 24, 2025Updated last year
- A method to improve mappings on circular genomes, using the BWA mapper☆11Mar 4, 2022Updated 4 years ago
- Searching for Horizontal Gene Transfer☆10Feb 22, 2020Updated 6 years ago
- A logistic regression model for testing differential abundance in compositional microbiome data☆13Jul 25, 2023Updated 3 years ago
- Overview of our data for microbial genomic benchmarking☆41Jun 19, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A database for signatures of public genomic sources☆18Jul 18, 2026Updated 3 months ago
- whole genome MLST analysis☆57Jun 17, 2026Updated 4 months ago
- Parametric sweep of simulated microbial communities and metagenomic sequencing.☆11Jul 15, 2022Updated 4 years ago
- Benchmarking FASTQ compression with 'mature' compression algorithms☆44Sep 19, 2024Updated 2 years ago
- Dissimilarity Overlap Curve analysis☆11Nov 14, 2022Updated 3 years ago
- A placeholder for all my random scripts. Some scripts might eventually graduate and go to their own projects, so don't be surprised if a…☆17Nov 24, 2025Updated 10 months ago
- R markdown documents copied from other folders on Dec 15th 2021☆14Nov 4, 2025Updated 11 months ago