Alternatives and similar repositories for sGLMM

Users that are interested in sGLMM are comparing it to the libraries listed below

• RUSH-LAB / RAMBO
  ☆20Updated 5 years ago
• richarddurbin / hash10x
  a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly
  ☆15Updated 6 years ago
• LiuBioinfo / SeqOthello
  SeqOthello supports fast coverage query and containment query.
  ☆12Updated 6 years ago
• GuillaumeHolley / BlastGraph
  BlastGraph is a new tool for computing intensive approximate pattern matching in a sequence graph or a de-Bruijn graph. Given an oriented…
  ☆12Updated 12 years ago
• uio-cels / genomicgraphcoords
  Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes
  ☆11Updated 8 years ago
• brc7 / DiversitySampling
  ☆10Updated 3 years ago
• Ritu-Kundu / Superbubbles
  SUPBUB is a tool that, in linear time, finds out superbubbles(special graph-structures) in a directed graph.
  ☆12Updated 6 years ago
• mklarqvist / djinn
  C++ library for analysing and storing large-scale cohorts of sequence variant data
  ☆17Updated 6 years ago
• ocxtal / rbread
  Header-only, gzread-like reader for gzip, bz2, and xz.
  ☆11Updated 7 years ago
• txje / c-minhash
  Simple and fast MinHash implementation in C with Python wrapper
  ☆13Updated 5 months ago
• lynxoid / nimbliner
  nimble aligner that will map your reads to the references on a laptop
  ☆11Updated 8 years ago
• QData / GaKCo-SVM
  ECML16: GaKCo: a Fast Gapped k-mer string Kernel using Counting
  ☆14Updated 6 years ago
• razorx89 / nmfgpu
  C++ library for CUDA accelerated computation of Non-negative Matrix Factorizations (NMF)
  ☆12Updated 8 years ago
• lh3 / lh3-snippets
  ☆14Updated 5 years ago
• BenLangmead / bowtie-scaling
  Experiments for "Scaling read aligners to hundreds of threads on general-purpose processors"
  ☆11Updated 7 years ago
• dnbaker / minicore
  Fast and memory-efficient clustering + coreset construction, including fast distance kernels for Bregman and f-divergences.
  ☆34Updated 2 years ago
• lh3 / gfa1
  This repo is deprecated. Please use gfatools instead.
  ☆15Updated 7 years ago
• Kingsford-Group / miniception
  ☆14Updated 5 years ago
• biodata-fun / htslib_howto
  Collection of simple C scripts for parsing vcf or bam files using the htslib C library. These scripts can be used as the starting point f…
  ☆11Updated 5 years ago
• medvedevgroup / UST
  ☆24Updated 4 years ago
• langmead-lab / vargas
  ☆24Updated 4 months ago
• rvaser / bioparser
  C++ library for parsing several formats in bioinformatics
  ☆10Updated 2 years ago
• bioinfologics / sdg
  Sequence Distance Graph framework: graph + reads + mapping + analysis
  ☆25Updated 3 years ago
• csirac / dynamicDBG
  Practical Dynamic de Bruijn Graphs
  ☆18Updated 5 years ago
• PMBio / limix
  We have moved to https://github.com/limix/limix.
  ☆23Updated 8 years ago
• DReichLab / adna
  Processing WGS aDNA data using the ReichLab protocol
  ☆13Updated 6 years ago
• gui11aume / mmp
  MEM mapper prototype
  ☆13Updated 5 years ago
• rvaser / rala
  Layout module for raw de novo genome assembly of long uncorrected reads.
  ☆20Updated 4 years ago
• prophyle / prophasm
  ProphAsm – a rapid computation of simplitigs directly from k-mer sets
  ☆25Updated 2 years ago
• lh3 / rmaxcut
  An experimental tool to find approximate max-cuts in a large graph
  ☆10Updated 4 years ago