Alternatives and similar repositories for sGLMM

Users that are interested in sGLMM are comparing it to the libraries listed below

• LiuBioinfo / SeqOthello
  SeqOthello supports fast coverage query and containment query.
  ☆12Updated 6 years ago
• uio-cels / genomicgraphcoords
  Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes
  ☆11Updated 8 years ago
• RUSH-LAB / RAMBO
  ☆20Updated 4 years ago
• jpritt / boiler
  Boiler: a software tool for highly efficient, lossy compression of RNA-seq alignments
  ☆13Updated 9 years ago
• QData / GaKCo-SVM
  ECML16: GaKCo: a Fast Gapped k-mer string Kernel using Counting
  ☆14Updated 5 years ago
• lh3 / lh3-snippets
  ☆14Updated 5 years ago
• richarddurbin / hash10x
  a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly
  ☆15Updated 5 years ago
• opentargets-archive / genetics-app
  Open Targets Genetics UI
  ☆15Updated 5 months ago
• statOmics / stageR
  stageR package
  ☆13Updated 2 years ago
• lynxoid / nimbliner
  nimble aligner that will map your reads to the references on a laptop
  ☆12Updated 8 years ago
• taylor-lab / annotateMaf
  Add functional variant annotation to MAF file
  ☆11Updated 7 months ago
• hwanglab / divine
  Divine: Prioritizing Genes for Rare Mendelian Disease in Whole Exome Sequencing Data
  ☆13Updated 6 years ago
• horta / almosthere
  Progress indicator library written in C.
  ☆10Updated 8 months ago
• statgen / LDServer
  Fast API server for calculating linkage disequilibrium
  ☆19Updated 2 months ago
• rohan-shah / mpMap2
  New version of mpMap
  ☆12Updated 4 years ago
• BenLangmead / qtip
  Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities
  ☆25Updated 5 years ago
• GuillaumeHolley / BlastGraph
  BlastGraph is a new tool for computing intensive approximate pattern matching in a sequence graph or a de-Bruijn graph. Given an oriented…
  ☆12Updated 12 years ago
• chr1swallace / simGWAS
  Simulating the expected output from a GWAS with a given causal model.
  ☆11Updated 4 years ago
• cbare / vcf2maf
  Convert VCF (Variant Call Format) into TCGA MAF (Mutation Annotation Format)
  ☆14Updated 9 years ago
• kharchenkolab / vrnmf
  Volume-regularized NMF
  ☆17Updated 3 years ago
• hanfang / Topsorter
  Graphical assessment of structrial variants using 10x genomics data
  ☆10Updated 8 years ago
• jlguillaume / louvain
  C implementation of the Louvain method for community detection in graphs
  ☆12Updated 5 years ago
• olgabot / kvector
  kvector is a small utility for converting motifs to kmer vectors to compare motifs of different lengths
  ☆10Updated 8 years ago
• ocxtal / comb
  comb aligner -- a graphical nucleotide sequence alignment tool
  ☆9Updated 8 years ago
• ratschlab / graph_annotation
  Code accompanying the publication for compressed graph annotation
  ☆13Updated 6 years ago
• BenLangmead / bowtie-scaling
  Experiments for "Scaling read aligners to hundreds of threads on general-purpose processors"
  ☆11Updated 7 years ago
• NVIDIA-Genomics-Research / racon-gpu
  Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads
  ☆17Updated 4 years ago
• lkuchenb / imseq
  IMSEQ - IMmunogenetic SEQuence Analysis
  ☆15Updated 6 years ago
• raulossio / VCF-plotein
  Visualisation and prioritisation of genomic variants from human exome sequencing projects
  ☆13Updated 6 years ago
• edawson / svaha
  Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]
  ☆12Updated last year