Lightweight Alignment Based Resolution of Alternative Three Prime Ends
☆10Jan 26, 2024Updated 2 years ago
Alternatives and similar repositories for LABRAT
Users that are interested in LABRAT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Model-based analysis of APA using 3' end-linked reads☆12Aug 14, 2021Updated 4 years ago
- ☆20Sep 28, 2019Updated 6 years ago
- polyApipe☆19Feb 10, 2025Updated last year
- splicing and feature maps for RBPs☆25Apr 26, 2026Updated last week
- SPLICE-q -- A Python tool for genome-wide SPLIcing Efficiency quantification from RNA-seq data.☆12Sep 15, 2023Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Mapping 3′UTR alternative polyadenylation quantitative trait loci through population-scale transcriptomic and genomic data☆15Mar 15, 2023Updated 3 years ago
- Systematic analyses of intronic polyadenylation from standard RNAseq data☆16Sep 10, 2024Updated last year
- DLPRB: A Deep Learning Approach for Predicting Protein-RNA Binding☆13Nov 29, 2018Updated 7 years ago
- apa: research platform for the study of alternative polyadenylation, expressRNA.org☆12Sep 2, 2021Updated 4 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Dec 17, 2021Updated 4 years ago
- ☆21Aug 26, 2024Updated last year
- ORF Quantification pipeline for Alternative Splicing☆16May 11, 2021Updated 4 years ago
- Community effort to evaluate computational methods for the detection and quantification of poly(A) sites and estimating their differentia…☆14Jan 11, 2024Updated 2 years ago
- CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.☆23Jan 15, 2026Updated 3 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆23May 16, 2020Updated 5 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆66Sep 12, 2023Updated 2 years ago
- Implementation of SpliceAI, Illumina's deep neural network to predict variant effects on splicing, in PyTorch.☆15Mar 3, 2023Updated 3 years ago
- Repel Visually Similar Colors for Colorblind Users (CRAN)☆10Jul 21, 2025Updated 9 months ago
- Superfast betabinomial fit implemented in Cython☆15Oct 21, 2025Updated 6 months ago
- ☆27Oct 22, 2025Updated 6 months ago
- Single Cell RNA PolyA Site Discovery☆11Jan 28, 2026Updated 3 months ago
- TMARKER is a software for cancer cell nucleus detection, segmentation, counting, and classification.☆14Feb 22, 2017Updated 9 years ago
- ABSOLUTE source code that works with allelic copy ratio on both hg19 and hg38☆14Nov 5, 2025Updated 6 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- This is a repository of the scLinaX R package developed in the Tomofuji et al (Quantification of escape from X chromosome inactivation wi…☆11Sep 12, 2025Updated 7 months ago
- MEME motif-based sequence analysis tools (http://meme-suite.org), with FreeBSD tweaks☆16Jul 26, 2017Updated 8 years ago
- CLIP-seq Analysis of Multi-mapped reads☆32Jul 20, 2021Updated 4 years ago
- A Shiny-based framework to analyze and visualize interactively genomic data☆11May 11, 2023Updated 2 years ago
- ggplot2 geoms to outline groups of data points☆16Nov 24, 2023Updated 2 years ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆35Nov 8, 2023Updated 2 years ago
- R interface to megadepth: BigWig and BAM related utilities☆14Mar 31, 2026Updated last month
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆43Jun 17, 2024Updated last year
- Find CpG islands in genome☆11Mar 27, 2020Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Exploring Isoform-specific interactions☆13Sep 16, 2025Updated 7 months ago
- simulate slow network connections on *nix☆10Feb 29, 2012Updated 14 years ago
- Paired Replicate Analysis of Allelic Differential Splicing Events☆12Feb 21, 2023Updated 3 years ago
- Reference data for cell-type assignment with clustifyr☆13Nov 3, 2022Updated 3 years ago
- Capture Django HTTP requests & responses for debugging☆13May 16, 2017Updated 8 years ago
- Code for the meQTL analyses presented in Hawe et al. 2021 Nature Genetics☆14Jan 14, 2022Updated 4 years ago
- iDeep: integrated prediction of RNA-protein binding sites using deep learning☆39Oct 7, 2020Updated 5 years ago