TaliaferroLab / LABRATView external linksLinks
Lightweight Alignment Based Resolution of Alternative Three Prime Ends
☆10Jan 26, 2024Updated 2 years ago
Alternatives and similar repositories for LABRAT
Users that are interested in LABRAT are comparing it to the libraries listed below
Sorting:
- Model-based analysis of APA using 3' end-linked reads☆11Aug 14, 2021Updated 4 years ago
- ☆20Sep 28, 2019Updated 6 years ago
- polyApipe☆19Feb 10, 2025Updated last year
- Mapping 3′UTR alternative polyadenylation quantitative trait loci through population-scale transcriptomic and genomic data☆13Mar 15, 2023Updated 2 years ago
- apa: research platform for the study of alternative polyadenylation, expressRNA.org☆12Sep 2, 2021Updated 4 years ago
- Systematic analyses of intronic polyadenylation from standard RNAseq data☆16Sep 10, 2024Updated last year
- splicing and feature maps for RBPs☆25Apr 19, 2022Updated 3 years ago
- Community effort to evaluate computational methods for the detection and quantification of poly(A) sites and estimating their differentia…☆14Jan 11, 2024Updated 2 years ago
- DLPRB: A Deep Learning Approach for Predicting Protein-RNA Binding☆13Nov 29, 2018Updated 7 years ago
- SPLICE-q -- A Python tool for genome-wide SPLIcing Efficiency quantification from RNA-seq data.☆12Sep 15, 2023Updated 2 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Dec 17, 2021Updated 4 years ago
- ORF Quantification pipeline for Alternative Splicing☆16May 11, 2021Updated 4 years ago
- CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.☆23Jan 15, 2026Updated 3 weeks ago
- ☆21Aug 26, 2024Updated last year
- ☆23May 16, 2020Updated 5 years ago
- ☆25Oct 22, 2025Updated 3 months ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆63Sep 12, 2023Updated 2 years ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆34Nov 8, 2023Updated 2 years ago
- ☆12Dec 14, 2021Updated 4 years ago
- This is a repository of the scLinaX R package developed in the Tomofuji et al (Quantification of escape from X chromosome inactivation wi…☆11Sep 12, 2025Updated 5 months ago
- CLIP-seq Analysis of Multi-mapped reads☆31Jul 20, 2021Updated 4 years ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆43Oct 24, 2025Updated 3 months ago
- ☆11Feb 3, 2026Updated last week
- Master's project - Artificial Immune System for symbolic regression.☆14May 2, 2013Updated 12 years ago
- UKRIN Kidney Analysis Toolbox☆12Mar 27, 2025Updated 10 months ago
- Tutorials in datamining and bioinformatics☆12Jan 18, 2024Updated 2 years ago
- A Shiny-based framework to analyze and visualize interactively genomic data☆11May 11, 2023Updated 2 years ago
- Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…☆43Dec 30, 2025Updated last month
- iDeep: integrated prediction of RNA-protein binding sites using deep learning☆39Oct 7, 2020Updated 5 years ago
- ABSOLUTE source code that works with allelic copy ratio on both hg19 and hg38☆13Nov 5, 2025Updated 3 months ago
- APA Regression Net - Predict and Engineer Alternative Polyadenylation☆40Oct 1, 2021Updated 4 years ago
- Find CpG islands in genome☆11Mar 27, 2020Updated 5 years ago
- Infer metadata for your downstream analysis straight from your RNA-Seq data☆15Nov 20, 2024Updated last year
- A list of bioinformatic tools for working with Ribo-Seq data☆19Apr 11, 2024Updated last year
- ☆10Feb 14, 2022Updated 4 years ago
- Scripts for identifying sites with differential error rates in mapped nanopore DRS data☆11Nov 27, 2020Updated 5 years ago
- A tool for visualising kmers in 2D space.☆12Feb 23, 2025Updated 11 months ago
- CONNET: Accurate Genome Consensus in Assembling Nanopore Sequencing Data via Deep Learning☆11Oct 28, 2022Updated 3 years ago
- Code for the meQTL analyses presented in Hawe et al. 2021 Nature Genetics☆14Jan 14, 2022Updated 4 years ago