Lightweight Alignment Based Resolution of Alternative Three Prime Ends
☆10Jan 26, 2024Updated 2 years ago
Alternatives and similar repositories for LABRAT
Users that are interested in LABRAT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Model-based analysis of APA using 3' end-linked reads☆13Aug 14, 2021Updated 4 years ago
- ☆20Sep 28, 2019Updated 6 years ago
- polyApipe☆22Feb 10, 2025Updated last year
- Systematic analyses of intronic polyadenylation from standard RNAseq data☆18Sep 10, 2024Updated last year
- SPLICE-q -- A Python tool for genome-wide SPLIcing Efficiency quantification from RNA-seq data.☆11Sep 15, 2023Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- splicing and feature maps for RBPs☆25Apr 26, 2026Updated 2 months ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Dec 17, 2021Updated 4 years ago
- DLPRB: A Deep Learning Approach for Predicting Protein-RNA Binding☆13Nov 29, 2018Updated 7 years ago
- Mapping 3′UTR alternative polyadenylation quantitative trait loci through population-scale transcriptomic and genomic data☆16Mar 15, 2023Updated 3 years ago
- apa: research platform for the study of alternative polyadenylation, expressRNA.org☆12Sep 2, 2021Updated 4 years ago
- ☆21Aug 26, 2024Updated last year
- ORF Quantification pipeline for Alternative Splicing☆16May 11, 2021Updated 5 years ago
- Community effort to evaluate computational methods for the detection and quantification of poly(A) sites and estimating their differentia…☆16Jan 11, 2024Updated 2 years ago
- ☆25May 16, 2020Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.☆24Jan 15, 2026Updated 6 months ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆68Sep 12, 2023Updated 2 years ago
- Implementation of SpliceAI, Illumina's deep neural network to predict variant effects on splicing, in PyTorch.☆15Mar 3, 2023Updated 3 years ago
- Repel Visually Similar Colors for Colorblind Users (CRAN)☆11Jul 17, 2026Updated last week
- Superfast betabinomial fit implemented in Cython☆15Oct 21, 2025Updated 9 months ago
- TMARKER is a software for cancer cell nucleus detection, segmentation, counting, and classification.☆14Feb 22, 2017Updated 9 years ago
- Single Cell RNA PolyA Site Discovery☆11Updated this week
- ☆27Oct 22, 2025Updated 9 months ago
- This is a repository of the scLinaX R package developed in the Tomofuji et al (Quantification of escape from X chromosome inactivation wi…☆11Sep 12, 2025Updated 10 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A user-friendly R pipeline for biomarker discovery in single-cell transcriptomics☆14Jan 9, 2026Updated 6 months ago
- A Shiny-based framework to analyze and visualize interactively genomic data☆11May 11, 2023Updated 3 years ago
- Systemic Infrastructure Resilience Analysis☆13Jun 24, 2026Updated last month
- CLIP-seq Analysis of Multi-mapped reads☆32Jul 20, 2021Updated 5 years ago
- MEME motif-based sequence analysis tools (http://meme-suite.org), with FreeBSD tweaks☆16Jul 26, 2017Updated 8 years ago
- ggplot2 geoms to outline groups of data points☆16Nov 24, 2023Updated 2 years ago
- R interface to megadepth: BigWig and BAM related utilities☆14Mar 31, 2026Updated 3 months ago
- ☆11Mar 4, 2025Updated last year
- Master's project - Artificial Immune System for symbolic regression.☆14May 2, 2013Updated 13 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Capture Django HTTP requests & responses for debugging☆13May 16, 2017Updated 9 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆43Jun 17, 2024Updated 2 years ago
- Find CpG islands in genome☆11Mar 27, 2020Updated 6 years ago
- [DEPRECATED] Bamboo: a tool for quality control and error profiling of long-read sequencing data.☆15Mar 26, 2026Updated 3 months ago
- Exploring Isoform-specific interactions☆13Updated this week
- ☆10Feb 14, 2022Updated 4 years ago
- simulate slow network connections on *nix☆10Feb 29, 2012Updated 14 years ago