A microbiome analysis toolkit for R
☆26Aug 21, 2023Updated 3 years ago
Alternatives and similar repositories for Tjazi
Users that are interested in Tjazi are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Hierarchical Approach to Pangenomics Inference☆13Apr 15, 2024Updated 2 years ago
- Pipeline which removes human DNA from microbial shotgun samples.☆16Aug 25, 2025Updated last year
- Snakemake workflow for comparison of differential abundance ranks☆13Mar 22, 2024Updated 2 years ago
- ☆20Nov 11, 2024Updated last year
- ☆19Nov 26, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Raspir, the rare species identifier☆11Oct 19, 2023Updated 2 years ago
- ☆14Apr 8, 2022Updated 4 years ago
- skandiver is a program for identifying mobile genetic elements (prophages, plasmids, transposases, etc.) from assembled whole genome sequ…☆15Nov 20, 2025Updated 10 months ago
- A taxonomic classifier for shotgun metagenomics reads☆10Aug 26, 2026Updated last month
- STAMPS 2018 course☆14Aug 8, 2018Updated 8 years ago
- Repository of sequences to annotate hydrocarbon-degrading genes/proteins from genomes/metagenomes☆14May 10, 2024Updated 2 years ago
- Data, scripts, and lectures for the Introduction to Metagenomics Summer Workshop 2019.☆36Jul 15, 2019Updated 7 years ago
- Metagenomics-related extended functionalities to samtools☆23Sep 2, 2026Updated last month
- Metagenomics-focused BAM file manipulation☆15Jul 8, 2019Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Python3 wrapper for parallelized gene prediction using Prodigal☆11Mar 3, 2023Updated 3 years ago
- Find similar photos with Python 🐍☆18Feb 1, 2023Updated 3 years ago
- Unified Human Gut Virome Catalog☆48May 29, 2026Updated 4 months ago
- Inferring global and local strict molecular clocks using root-to-tip regression☆20Jun 30, 2026Updated 3 months ago
- Development repository for R package 'PLSDAbatch ' hosted on Bioconductor.☆16Jun 26, 2026Updated 3 months ago
- Toolkit for untargeted metabolomics profiling☆13Aug 25, 2025Updated last year
- Do microbiome analysis with dada2 and phyloseq object☆16Oct 9, 2024Updated 2 years ago
- Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.…☆37Jun 24, 2021Updated 5 years ago
- Metagenome analysis using the Kraken software suite☆38Sep 29, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.☆56Sep 28, 2026Updated last week
- Radboud Summer Course 7/2021 https://www.ru.nl/radboudsummerschool/courses/2021/brain-bacteria-behaviour/☆12Aug 12, 2021Updated 5 years ago
- Template for building a small workflow in Nextflow☆17May 2, 2022Updated 4 years ago
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆41May 1, 2023Updated 3 years ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆26May 18, 2024Updated 2 years ago
- All R codes for the guide "Doing Meta-Analysis in R"☆10Jun 20, 2019Updated 7 years ago
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆425Sep 10, 2026Updated last month
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆24Sep 27, 2026Updated last week
- A bioinformatic tool facilitating automated in-source fragmentation identification☆11Sep 6, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- UZH BIO392: Bioinformatics of Sequence Variation Course Repository☆15May 29, 2026Updated 4 months ago
- Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).☆28May 7, 2026Updated 5 months ago
- A tissue-specific single-cell biological age model☆14Jul 26, 2023Updated 3 years ago
- Using kallisto for metagenomic analysis☆49Jan 12, 2017Updated 9 years ago
- frame-shift correction for long-read (meta)genomics☆33Dec 11, 2023Updated 2 years ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆44Sep 3, 2024Updated 2 years ago
- Differential Correlation across Ranked Samples☆13May 31, 2023Updated 3 years ago