Alternatives and similar repositories for CELLama

Users that are interested in CELLama are comparing it to the libraries listed below

• theislab / scTab
  ☆59Updated 11 months ago
• theislab / prophet
  ☆36Updated this week
• Lotfollahi-lab / nichecompass
  End-to-end analysis of spatial multi-omics data
  ☆90Updated 3 weeks ago
• cantinilab / scPRINT
  single cell foundation model
  ☆100Updated this week
• romain-lopez / DestVI-reproducibility
  Reproducing the experiments of the DestVI paper
  ☆19Updated 3 years ago
• theislab / multicpa
  ☆15Updated 3 years ago
• czi-ai / scGenePT
  ☆22Updated 7 months ago
• czi-ai / transcriptformer
  ☆73Updated this week
• theislab / CellFlow
  Modeling complex perturbations with CellFlow
  ☆83Updated this week
• nitzanlab / biolord
  ☆81Updated last year
• epigen / CellWhisperer
  CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets
  ☆60Updated 10 months ago
• biomed-AI / CellFM
  ☆73Updated 3 months ago
• theislab / DRVI
  Unsupervised Deep Disentangled Representation of Single-Cell Omics
  ☆48Updated this week
• QuKunLab / MultiomeBenchmarking
  ☆50Updated 5 months ago
• JiangBioLab / DeepTalk
  Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…
  ☆26Updated 11 months ago
• scverse / muon-tutorials
  Tutorials for multimodal omics data analysis
  ☆16Updated 6 months ago
• nceglia / genevector
  Vector representations of gene co-expression in single cell RNAseq.
  ☆36Updated 2 months ago
• Su-informatics-lab / DSTG
  Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence
  ☆39Updated 3 years ago
• ZhangLabGT / scMultiSim
  A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.
  ☆60Updated 7 months ago
• lanagarmire / Asgard
  ☆43Updated last year
• SuperBianC / scMulan
  Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.
  ☆61Updated last year
• dpeerlab / ENVI
  ☆50Updated 3 months ago
• pinellolab / simba
  SIMBA: SIngle-cell eMBedding Along with features
  ☆63Updated 10 months ago
• mexchy1000 / CellDART
  domain adaptation of spatial and single-cell transcriptome
  ☆27Updated 11 months ago
• prabhakarlab / Banksy_py
  ☆59Updated 3 weeks ago
• Roy-lab / scMTNI
  ☆30Updated last month
• shuxiaoc / maxfuse
  ☆55Updated last year
• Teichlab / celcomen
  ☆16Updated last week
• clinicalml / sc-foundation-eval
  Code for evaluating single cell foundation models scBERT and scGPT
  ☆46Updated last year
• TencentAILabHealthcare / scTranslator
  ☆36Updated this week