Alternatives and similar repositories for CELLama:

Users that are interested in CELLama are comparing it to the libraries listed below

• epigen / CellWhisperer
  CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets
  ☆51Updated 4 months ago
• lanagarmire / Asgard
  ☆41Updated last year
• Lotfollahi-lab / nichecompass
  End-to-end analysis of spatial multi-omics data
  ☆40Updated 2 weeks ago
• welch-lab / pyliger
  Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)
  ☆29Updated 7 months ago
• Roy-lab / scMTNI
  ☆24Updated 2 months ago
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆50Updated last month
• GuangyuWangLab2021 / cellDancer
  Predict RNA velocity through deep learning
  ☆66Updated last year
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆67Updated 2 months ago
• theislab / scTab
  ☆56Updated 5 months ago
• Center-for-Health-Data-Science / multiDGD
  ☆24Updated last month
• MarioniLab / sagenet
  Spatial reconstruction of dissociated single-cell data
  ☆17Updated last year
• romain-lopez / DestVI-reproducibility
  Reproducing the experiments of the DestVI paper
  ☆17Updated 3 years ago
• earmingol / cell2cell
  User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
  ☆59Updated 8 months ago
• JiangBioLab / DeepTalk
  Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…
  ☆22Updated 5 months ago
• JiangBioLab / DeepCCI
  ☆21Updated 2 years ago
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆60Updated 10 months ago
• cantinilab / HuMMuS
  Molecular interactions inference from single-cell multi-omics data
  ☆22Updated 3 months ago
• huidongchen / simba
  SIMBA: SIngle-cell eMBedding Along with features
  ☆18Updated 10 months ago
• cantinilab / Circe
  Co-accessibility network from single-cell ATAC-seq data. Python code, based on Cicero package (R).
  ☆19Updated 2 weeks ago
• whhudson / spatialTCR
  ☆12Updated 2 years ago
• theislab / prophet
  ☆29Updated this week
• rargelaguet / mouse_organogenesis_10x_multiome_publication
  Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""
  ☆40Updated 2 years ago
• josephreplogle / guide_calling
  Tools for sgRNA calling in direct capture Perturb-seq data
  ☆32Updated last year
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆25Updated last month
• xiaoyeye / TFvelo
  ☆44Updated 9 months ago
• kaizhang / single-cell-benchmark
  ☆10Updated last year
• rs239 / velorama
  Gene regulatory network inference for RNA velocity and pseudotime data
  ☆24Updated 2 weeks ago
• immunogenomics / TiRP
  code repository for Lagattuta et al. "Repertoire analyses reveal T cell receptor sequence features that influence T cell fate." Nat. Imm.…
  ☆12Updated last month
• secrierlab / SpottedPy
  Hotspot cluster distance analysis in spatial transcriptomic data
  ☆25Updated 3 weeks ago
• jiang-q19 / scPRAM
  scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism
  ☆13Updated 4 months ago